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Ümit V. Çatalyürek

  • Professor, SBS-Biomedical Informatics
  • Professor, Electrical & Computer Engr.
  • Professor, Computer Science & Engineering
  • Vice Chair of Acad Affairs, SBS-Biomedical Informatics
  • Professor, COPH-Division of Biostatistics
  • 1800 Cannon Drive
    310N
    Columbus, OH 43210
  • 614-292-0914

About

Education

PhD 2000, Bilkent University, Turkey

Areas of interest

High-performance computing, runtime systems for data-intensive computing, parallel algorithms for scientific and engineering applications, combinatorial scientific computing and biomedical informatics.

Biography

Ümit V. Çatalyürek is a Professor in the Departments of Biomedical Informatics, Electrical & Computer Engineering, and Computer Science & Engineering at the Ohio State University. Dr. Çatalyürek received his Ph.D. in 2000 from Bilkent University, and prior to joining the Ohio State University in 2001, he worked at Johns Hopkins University as a Research Associate and at the University of Maryland as a Visiting Research Scientist. Dr. Çatalyürek is a recipient of NSF CAREER award and primary investigator of several awards from Department of Energy, National Institute of Health, and National Science Foundation. Dr. Çatalyürek currently serves as an Associate Editor for Parallel Computing, an as an editorial board member for IEEE Transactions on Parallel and Distributed Computing, Journal of Parallel and Distributed Computing, and Network Modeling and Analysis in Health Informatics and Bioinformatics. In the past, he also served on the editorial board of SIAM Journal of Scientific Computing. Dr. Çatalyürek was the founding General Chair of 1st ACM International Health Informatics Symposium 2010, Program Chair of 5th ACM Conference on Bioinformatics, Computational Biology and Health Informatics 2014, and Workshops Chair of IPDPS 2010-2014. He also serves on the program committees and organizing committees of several international conferences. He is a member of ACM, SIAM and senior member of IEEE. Dr. Çatalyürek has co-authored more than 200 peer-reviewed articles, invited book chapters and papers. His main research areas are in high performance computing, combinatorial scientific computing and biomedical informatics.

Office

310A Lincoln Tower, ph: 614.292.0914, fax: 614.688.6600, or 316 Dreese Labs, fax: 614-292-7596

Alternate address

Department of Biomedical Informatics, 250 Lincoln Tower, 1800 Cannon Dr., Columbus, OH 43210

Honors

  • 2011

    The runner-up of the poster award. .

  • 2010

    Best Student Paper Award. .

  • 2008

    SBS Excellence in Teaching and Research Award. .

  • 2007

    NSF CAREER Award. .

  • 2007

    Best paper award in Algorithms track of the 2007 International Parallel and Distributed Processing Symposium (IPDPS 2007)..

  • 1992

    Bilkent University Scholarship. Bilkent University.

  • 1987

    Third Place in High School Chemistry Contest, Marmara Region. .

  • 1987

    Second Place in High School Math Contest, Marmara Region. .

  • 1987

    Bilkent University Scholarship. Bilkent University.

Books

1999

  • Ü.V. Çatalyürek. 1999. "Hypergraph Models for Sparse Matrix Partitioning and Reordering." Ankara: Computer Engineering and Information Science, Bilkent University.

1994

  • Ü.V. Çatalyürek. 1994. "A Constructive Multi-way circuit Partitioning Algorithm Based on Minimum Degree Ordering." Ankara: Computer Engineering and Information Science, Bilkent University.

Edited Books

2011

  • 2011. "Contemporary Computing, Proceedings of 4th International Conference, IC3." Berlin: Springer.

2010

  • 2010. "Proceedings of ACM International Health Informatics Symposium (IHI 2010)." Arlington: ACM.

Chapters

2012

  • R.H. Bisseling, B.O. Fagginger Auer, A.J. N. Yzelman, T. van Leeuwen and Ãœ.V. Çatalyürek. 2012. "Two-dimensional approaches to sparse matrix partitioning." In Combinatorial Scientific Computing, edited by U. Naumann, O. Schenk, New York: Chapman & Hall / CRC Press.
  • E.G. Boman, Ãœ.V. Çatalyürek, C. Chevalier K.D. Devine. 2012. "Parallel Partitioning, Coloring, and Ordering for Scientific Computing." In Combinatorial Scientific Computing, edited by U. Naumann, O. Schenk, New York: Chapman & Hall / CRC Press.

2011

  • Ãœ.V. Çatalyürek and C. Aykanat. 2011. "PaToH (Partitioning Tool for Hypegraphs)." In Encyclopedia of Parallel Computing, edited by D. Padua, 1479 - 1487. NY: Springer.
  • Ãœ.V. Çatalyürek, B. Uçar, and C. Aykanat. 2011. "Hypergraph Partitioning." In Encyclopedia of Parallel Computing, 871 - 881. NY: Springer.

2010

  • Ãœ.V. Çatalyürek, R. Ferreira, T. D. R. Hartley, R. Sachetto, and G. Teodoro. 2010. "Dataflow Frameworks for Emerging Heterogeneous Architectures and Their Applications to Biomedicine." In Scientific Computing with Multicore and Accelerators, edited by J. Dongarra, D. A. Bader, and J. Kurzak, NY: Chapman & Hall / CRC Press.

2009

  • Ãœ.V. Çatalyürek, D. Bozdag, E.G. Boman, K.D. Devine, R. Heaphy, L.A. Riesen. 2009. "Hypergraph-based Dynamic Partitioning and Load Balancing." In Advanced Computation Infrastructures for Parallel/Distributed Adaptive Applications, edited by M. Parashar, X. Li, S. Chandra, New York: John Wiley & Sons.
  • Ãœ.V. Çatalyürek, T. Hartley, O. Sertel, M. Ujaldón. A. Ruiz, J. Saltz, and M. Gurcan. 2009. "Processing of Large-Scale Biomedical Images on a Cluster of Multi-Core CPUs and GPUs." In Trends in High Performance and Large Scale Computing, Amsterdam: IOS Press.

2008

  • Ãœ.V. Çatalyürek, S. Narayanan, O. Sertel, B.B. Cambazoglu, T. Pan, A. Sharma, S. Hastings, S. Langella, S. Oster, T. Kurc, M.N. Gurcan, J.H. Saltz. 2008. "Service-based access to and processing of large scientific datasets." In High Performance Computing (HPC) and Grids in Action:Advances in Parallel Computing, edited by Lucio Grandinetti, Amsterdam: IOS Press.

2005

  • T. Pan, D. Cowden, Ãœ.V. Çatalyürek, S. Jewell, S. Hastings, S. Oster, S. Langella, T. Kurc, J.H. Saltz. 2005. "Virtual Microscopy: Distributed Image Storage, Retrieval, Analysis, and Visualization." In In Parallel Computing in Bioinformatics, edited by Albert Zomaya, John Wiley & Sons.
  • M. Ribeiro, T. Kurc, T. Pan, K. Huang, Ãœ.V. Çatalyürek, X. Zhang, S. Langella, S. Hastings, S., Oster, R. Ferreira, J.H. Saltz. 2005. "Tools for Efficient Subsetting and Pipelined Processing of Large Scale, Distributed Biomedical Image Data." In Grid Computing: The New Frontier of High Performance Computing, 14, edited by Lucio Grandinetti, 403 - 423. Elsevier Science.

Journal Articles

2012

  • E. Saule, D. Bozdag, and U.V. Catalyurek, 2012, "Optimizing the maximum stretch of independent tasks on a cluster: From sequential tasks to moldable tasks." Journal of Parallel and Distributed Computing
  • E. Kayaaslan, A. Pinar, Ãœ.V. Çatalyürek, and C. Aykanat, 2012, "Partitioning Hypergraphs in Scientific Computing Applications through Vertex Separators on Graphs." SIAM Journal of Scientific Computing

2011

  • M. Parashar, H. Klie, T.M. Kurç, Ãœ.V. Çatalyürek, J.H. Saltz, and M. Wheeler, 2011, "Dynamic Decision and Data-Driven Strategies for the Optimal Management of Subsurface Geo-Systems." Journal of Algorithms & Computational Technology 5, no. 4, 645 - 665.
  • D.A. Janies, T. Treseder, B. Alexandrov, F. Habib, J.J. Chen, R. Ferreira, Ü.V. Çatalyürek, A. Varon, W.C. Wheeler, 2011, "The Supramap project: Linking pathogen genomes with geography to fight emergent infectious diseases." Cladistics 27, no. 1, 61 - 66.
  • N. Vydyanathan, Ü.V. Çatalyürek, T.M. Kurç, P. Sadayappan and J.H. Saltz, 2011, "Optimizing latency and Throughput of application workflows on clusters." Parallel Computing 37, no. 10-11, 694 - 712.
  • V.J. Vieland, Y. Huang, S.C. Seok, J. Burian, Ü.V. Çatalyürek, J. O’Connell, A. Segre, W. Valentine-Cooper, 2011, "KELVIN: a Software Package for Rigorous Measurement of Statistical Evidence in Human Genetics." Human Heredity 72, no. 4, 276 - 288.
  • F. Igual, R. Mayo, T. Hartley, Ãœ.V. Çatalyürek, A. Ruiz, and M. Ujaldón, 2011, "Color and Texture Analysis on Emerging Parallel Architectures." International Journal of High Performance Computing Applications 25, no. 4, 404 - 427.
  • Ãœ.V. Çatalyürek, C. Aykanat and E. Kayaaslan, 2011, "Hypergraph Partitioning-Based Fill-Reducing Ordering." SIAM Journal of Scientific Computing 33, no. 4, 1996 - 2023.
  • G. Teodoro, T. Hartley, Ãœ.V. Çatalyürek, and R. Ferreira, 2011, "Optimizing dataflow applications on heterogeneous environments." Cluster Computing-The Journal of Networks Software Tools and Applications

2010

  • Ü.V. Çatalyürek, B. Rutt, K. Metzroth, A. Hakobyan, T. Aldemir, R. Denning, S. Dunagan D. Kunsman, 2010, "Development of a code-agnostic computational infrastructure for the dynamic generation of accident progression even trees." Reliability Engineering & System Safety 95, no. 3, 278 - 294.
  • D. Bozdag, Ü.V. Çatalyürek, A. H. Gebremedhin, F. Manne, E.G. Boman, and F. Özgüner, 2010, "Distributed-memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation." SIAM Journal of Scientific Computing 4, no. 32, 2418 - 2446.
  • B. Ucar, Ü.V. Çatalyürek, C. Aykanat, 2010, "A matrix partitioning interface to PaToH in MATLAB." Parallel Computing 36, no. 5-6, 254 - 272.
  • Ü.V. Çatalyürek, C. Aykanat, B. Ucar, 2010, "On two-dimensional sparse matrix partitioning: Models, Methods, and a Recipe." SIAM Journal of Scientific Computing 32, no. 2, 656 - 583.

2009

  • Sertel,O; Kong,J; Shimada,H; Catalyurek,U,V; Saltz,J,H; Gurcan,M,N, 2009, "Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development." PATTERN RECOGNITION 42, no. 6, 1093 - 1103.
  • Ãœ.V. Çatalyürek, E.G. Boman, K.D. Devine, D. Bozdag, R.T. Heaphy, L.A. Riesen, 2009, "A Repartitioning Hypergraph Model for Dynamic Load Balancing." Journal of Parallel and Distributed Computing 69, no. 8, 711 - 724.
  • D. Bozdag, F. Ozguner, Ãœ.V. Çatalyürek, 2009, "Compaction of Schedules and a Two-Stage Approach for Duplication-Based DAG Scheduling." IEEE Transaction on Parallel and Distributed Systems 20, no. 6, 857 - 871.
  • A. Ruiz, O. Sertel, M. Ujaldon, Ãœ.V. Çatalyürek, J.H. Saltz, M.N. Gurcan, 2009, "Stroma Classification for Neuroblastoma on Graphics Processors." Int. J. of Data Mining and Bioinformatics 3, no. 3, 280 - 298.
  • S. Erdal, Ü.V. Çatalyürek, P.R. Payne, J. Kamal, J.H. Saltz, M.N. Gurcan, 2009, "A Knowledge-Anchored Integrative Image Search and Retrieval System." Journal of Digital Imaging 22, no. 2, 166 - 182.
  • Erdal,Selnur; Catalyurek,Umit,V; Payne,Philip,RO; Saltz,Joel; Kamal,Jyoti; Gurcan,Metin,N, 2009, "A Knowledge-Anchored Integrative Image Search and Retrieval System." JOURNAL OF DIGITAL IMAGING 22, no. 2, 166 - 182.
  • Ruiz,Antonio; Sertel,Olcay; Ujaldon,Manuel; Catalyurek,Umit; Saltz,Joel; Gurcan,Metin,N, 2009, "Stroma classification for neuroblastoma on graphics processors." INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 3, no. 3, 280 - 298.
  • Vydyanathan,Naga; Krishnamoorthy,Sriram; Sabin,Gerald,M; Catalyurek,Umit,V; Kurc,Tahsin; Sadayappan,Ponnuswamy; Saltz,Joel,H, 2009, "An Integrated Approach to Locality-Conscious Processor Allocation and Scheduling of Mixed-Parallel Applications." IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS 20, no. 8, 1158 - 1172.
  • Bozdag,Doruk; Oezguener,Fuesun; Catalyurek,Umit,V, 2009, "Compaction of Schedules and a Two-Stage Approach for Duplication-Based DAG Scheduling." IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS 20, no. 6, 857 - 871.
  • O. Sertel, J. Kong, H. Shimada, Ãœ.V. Çatalyürek, J.H. Saltz, M.N. Gurcan, 2009, "Computer-aided Prognosis of Neuroblastoma on Whole-slide Images: Classification of Stromal Development." Special Issue of Pattern Recognition on Digital Image Processing and Pattern Recognition Techniques for the Detection of Cancer 42, no. 6, 1093 - 1103.
  • Sertel,Olcay; Kong,Jun; Catalyurek,Umit,V; Lozanski,Gerard; Saltz,Joel,H; Gurcan,Metin,N, 2009, "Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading." JOURNAL OF SIGNAL PROCESSING SYSTEMS FOR SIGNAL IMAGE AND VIDEO TECHNOLOGY 55, no. 1-3, 169 - 183.
  • O. Sertel, J. Kong, Ãœ.V. Çatalyürek, G. Lozanski, J.H. Saltz, M.N. Gurcan, 2009, "Histopathological image analysis using model-based intermediate representations and color texture: Follicular lymphoma grading." The Journal of Signal Processing Systems for Signal, Image, and Video Technology 55, no. 1, 169 - 183.
  • N. Vydyanathan, S. Krishnamoorthy, G. Sabin, Ãœ.V. Çatalyürek, T. Kurc, P. Sadayappan, J. Saltz, 2009, "An Integrated Approach to Locality Conscious PRocessor Allocation and Scheduling of Mixed Parallel Applications." IEEE Transaction on Parallel and Distributed Systems 20, no. 8, 1158 - 1172.

2008

  • Bozdag,Doruk; Gebremedhin,Assefaw,H; Manne,Fredrik; Boman,Erik,G; Catalyurek,Umit,V, 2008, "A framework for scalable greedy coloring on distributed-memory parallel computers." JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING 68, no. 4, 515 - 535.
  • E.G. Boman, D. Bozdag, Ãœ.V. Çatalyürek, K.D. Devine, A.H. Gebremedhin, P. Hovland and A. Pothen, 2008, "Combinatorial Algorithms for Computational Science and Engineering." Journal of Physics 125, no. 1, 12071 -
  • A. Hakobyan, K. Metzroth, T. Aldemir, R. Denning, S. Dunagan, D. Kunsman, B. Rutt, Ü.V. Çatalyürek, 2008, "Dynamic Generation of Accident Progression Event Trees." Nuclear Engineering and Design 12, no. 238, 3457 - 3467.
  • D. Bozdag, A.H. Gebremedhin, F. Manne, E.G. Boman, Ãœ.V. Çatalyürek, 2008, "A Framework for Scalable Greedy Coloring on Distributed Memory Parallel Computers." Journal of Parallel and Distributed Computing 4, no. 68, 515 - 535.
  • de Supinski,Bronis,R; Schulz,Martin; Bulatov,Vasily,V; Cabot,William; Chan,Bor; Cook,Andrew,W; Draegerl,Erik,W; Glosli,James,N; Greenough,Jeffrey,A; Henderson,Keith; Kubota,Alison; Louis,Steve; Miller,Brian,J; Patel,Mehul,V; Spelce,Thomas,E; Streitz,Frederick,H; Williams,Peter,L; Yates,Robert,K; Yoo,Andy; Almasi,George; Bhanot,Gyan; Gara,Alan; Gunnels,John,A; Gupta,Manish; Moreira,Jose; Sexton,James; Walkup,Bob; Archer,Charles; Gygi,Francois; Germann,Timothy,C; Kadau,Kai; Lomdahl,Peter,S; Rendleman,Charles; Welcome,Michael,L; McLendon,William; Hendrickson,Bruce; Franchetti,Franz; Kraig,Stefan; Lorenz,Juergen; Ueberhuber,Christoph,W; Chow,Edmond; Catalyuerek,Uemit, 2008, "Bluegene/L applications: Parallelism on a massive scale." INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS 22, no. 1, 33 - 51.
  • V. Kumar, B. Rutt, T.M Kurc, Ü.V. Çatalyürek, T. Pan, S. Chow, S. Lamont, M. Martone, J.H. Saltz, 2008, "Large-scale Biomedical Image Analysis in Grid Environments." IEEE Transactions on Information Technology in Biomedicine 12, no. 2, 154 - 161.
  • Kumar,Vijay,S; Rutt,Benjamin; Kurc,Tahsin; Catalyurek,Umit,V; Pan,Tony,C; Chow,Sunny; Lamont,Stephan; Martone,Maryann; Saltz,Joel,H, 2008, "Large-scale biomedical image analysis in grid environments." IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE 12, no. 2, 154 - 161.
  • J. Saltz, T. Kurc, S. Hastings, S. Langella, S. Oster, D. Ervin, A. Sharma, T. Pan, M. Gurcan, J. Permar, R. Ferreira, P. Payne, Ãœ.V. Çatalyürek, E. Caserta, G. Leone, M.C. Ostrowski, R. Madduri, I. Foster, S. Madhavan, K. Buetow, K. Shanbhag, E. Siegel, 2008, "e-Science, caGrid, and Translational Biomedical Research." Computer 41, no. 11, 58 - 66.
  • B. R. de Supinski, M. Schulz, V. V. Bulatov, W. Cabot, B. Chan, A. W. Cook, E. W. Draegerl, J. N. Glosli, J. A. Greenough, K. Henderson, A. Kubota, S. Louis, B. J. Miller, M. V. Patel, T. E. Spelce, F. H. Streitz, P. L. Williams, R. K. Yates, A. Yoo, G. Almasi, G. Bhanot, A. Gara, J. A. Gunnels, M. Gupta, J. Moreira, J. Sexton, B. Walkup, C. Archer, F. Gygi, T. C. Germann, K. Kadau, P. S. Lomdahl, C. Rendleman, M. L. Welcome, W. McLendon, B. Hendrickson, F. Franchetti, S. Kraig, J. Lorenz, C. W. Ueberhuber, E. Chow, and Ãœ.V. Çatalyürek, 2008, "Bluegene/L applications: Parallelism on a massive scale." International Journal High Perform Computing 22, no. 1, 33 - 51.
  • Saltz,Joel; Kurc,Tahsin; Hastings,Shannon; Langella,Stephen; Oster,Scott; Ervin,David; Sharma,Ashish; Pan,Tony; Gurcan,Metin; Permar,Justin; Ferreira,Renato; Payne,Philip; Catalyurek,Umit; Caserta,Enrico; Leone,Gustavo; Ostrowski,Michael,C; Madduri,Ravi; Foster,Ian; Madhavan,Subhashree; Buetow,Kenneth,H; Shanbhag,Krishnakant; Siegel,Eliot, 2008, "e-Science, caGrid, and Translational Biomedical Research." COMPUTER 41, no. 11, 58 - ?.
  • Hakobyan,Aram; Aldemir,Tunc; Denning,Richard; Dunagan,Sean; Kunsman,David; Rutt,Benjamin; Catalyurek,Umit, 2008, "Dynamic generation of accident progression event trees." NUCLEAR ENGINEERING AND DESIGN 238, no. 12, 3457 - 3467.

2007

  • E.G. Boman, D. Bozdag, Ãœ.V. Çatalyürek, K.D. Devine, A.H. Gebremedhin, P.D. Hovland, A. Pothen, M.M Strout, 2007, "Enabling High Performance Computational Science Through Combinatorial Algorithms." Journal of Physics: Conference Series 78, 12058 -
  • A. Pothen, A.H. Gebremedhin, F. Dobrian, E.G. Boman, K.D. Devine, P.D. Hovland, B. Norris, J. Utke, Ãœ.V. Çatalyürek, and M.M. Strout, 2007, "Combinatorial Algorithms for Petascale Science." SciDAC Review

2006

  • T.M. Kurc, D.A. Janies, A.D. Johnson, S. Langella, S. Oster, S. Hastings, F. Habib, T. Camerlengo, D. Ervin, Ü.V. Çatalyürek, J.H. Saltz, 2006, "An XML-based system for synthesis of data from disparate databases.." Journal of the American Medical Informatics Association : JAMIA 13, no. 3, 289 - 301.
  • Kurc,Tahsin; Janies,Daniel,A; Johnson,Andrew,D; Langella,Stephen; Oster,Scott; Hastings,Shannon; Habib,Farhat; Camerlengo,Terry; Ervin,David; Catalyurek,Umit,V; Saltz,Joel,H, 2006, "An XML-based system for synthesis of data from disparate databases." JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION 13, no. 3, 289 - 301.
  • Klie,H; Bangerth,W; Gai,X; Wheeler,M,F; Stoffa,P,L; Sen,M; Parashar,M; Catalyurek,U; Saltz,J; Kurc,T, 2006, "Models, methods and middleware for grid-enabled multiphysics oil reservoir management." ENGINEERING WITH COMPUTERS 22, no. 3-4, 349 - 370.
  • H. Klie, W. Bangerth, X. Gai, M.F. Wheeler, P.L. Stoffa, M. Sen, M. Prashar, Ü.V. Çatalyürek, J.H. Saltz, T.M. Kurc, 2006, "Models, Methods and Middleware for Grid-enabled Multiphysics Oil Reservoir Management." Engineering with Computers 22, no. 3, 349 - 370.
  • X. Zhang, B. Rutt, Ü.V. Çatalyürek, T.M. Kurc, P. Stoffa, M. Sen, J.H. Saltz, 2006, "Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis." The International Journal of High Performance Computing Applictions 20, no. 3, 423 - 438.

2005

  • M. Parashar, H. Klie, Ãœ.V. Çatalyürek, T. Kurc, W. Bangerth, V. Matossian, J. Saltz, M.F. Wheeler, 2005, "Application of grid-enabled technologies for solving optimization problems in data-driven reservoir studies." Future Generation Computer Systems, International Journal of Grid Computing 21, no. 1, 19 - 26.
  • S. Hastings, M. Ribeiro, S. Langella, S. Oster, Ü.V. Çatalyürek, T. Pan, K. Huang, R. Ferreira, J.H. Saltz, T. Kurc, 2005, "XML database support for distributed execution of data-intensive scientific workflows." SIGMOD Record 34, no. 3, 50 - 5.
  • Hastings,S; Oster,S; Langella,S; Kurc,T,M; Pan,T; Catalyurek,U,V; Saltz,J,H, 2005, "A grid-based image archival and analysis system." JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION 12, no. 3, 286 - 295.
  • S. Hastings, S. Oster, S. Langella, T.M. Kurc, T. Pan, Ü.V. Çatalyürek, J.H. Saltz, 2005, "A grid-based image archival and analysis system.." Journal of the American Medical Informatics Association : JAMIA 12, no. 3, 286 - 95.
  • Parashar,M; Klie,H; Catalyurek,U; Kurc,T; Bangerth,W; Matossian,V; Saltz,J; Wheeler,M,F, 2005, "Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies." FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF GRID COMPUTING AND ESCIENCE 21, no. 1, 19 - 26.
  • Kurc,T; Catalyurek,U; Zhang,X; Saltz,J; Martino,R; Wheeler,M; Peszynska,M; Sussman,A; Hansen,C; Sen,M; Seifoullaev,R; Stoffa,P; Torres-Verdin,C; Parashar,M, 2005, "A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies." CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE 17, no. 11, 1441 - 1467.
  • Hastings,S; Ribeiro,M; Langella,S; Oster,S; Catalyurek,U; Pan,T; Huang,K; Ferreira,R; Saltz,J; Kurc,T, 2005, "XML database support for distributed execution of data-intensive scientific workflows." SIGMOD RECORD 34, no. 3, 50 - 55.
  • T.M. Kurc, Ü.V. Çatalyürek, X. Zhang, J.H. Saltz, R. Martino, M. Wheeler, M. Peszynska, A. Sussman, C. Hansen, M. Sen, R. Seifoullaev, P. Stoffa, C. Torres-Verdin, M. Parashar, 2005, "A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies." Concurrency and Computation Practice & Experience 17, no. 11, 1441 - 67.

2004

  • C. Aykanat, A. Pinar, Ãœ.V. Çatalyürek, 2004, "Permuting Sparse Rectangular Matrices into Block-Diagonal Form.." SIAM Journal on Scientific Computing 25, no. 6, 1860 - 1879.
  • Aykanat,C; Pinar,A; Catalyurek,U,V, 2004, "Permuting sparse rectangular matrices into block-diagonal form." SIAM JOURNAL ON SCIENTIFIC COMPUTING 25, no. 6, 1860 - 1879.

2003

  • Ü.V. Çatalyürek, M.D. Beynon, C. Chang, T.M. Kurc, A. Sussman, J.H. Saltz, 2003, "The virtual microscope." IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society 7, no. 4, 230 - 48.
  • Catalyurek,U; Beynon,M,D; Chang,C,L; Kurc,T; Sussman,A; Saltz,J, 2003, "The virtual microscope." IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE 7, no. 4, 230 - 248.
  • S. Narayanan, T.M. Kurc, Ü.V. Çatalyürek, J.H. Saltz, 2003, "Database support for data-driven scientific applications in the grid." Parallel Processing Letters 13, no. 2, 245 - 271.

2002

  • M. Beynon, C. Chialin, Ü.V. Çatalyürek, T.M. Kurc, A. Sussman, H. Andrade, R.A. Ferreira, J.H. Saltz, 2002, "Processing large-scale multi-dimensional data in parallel and distributed environments." Parallel Computing 28, no. 5, 827 - 859.
  • Beynon,M; Chang,C,L; Catalyurek,U; Kurc,T; Sussman,A; Andrade,H; Ferreira,R; Saltz,J, 2002, "Processing large-scale mufti-dimensional data in parallel and distributed environments." PARALLEL COMPUTING 28, no. 5, 827 - 859.

2001

  • T.M. Kurc, Ãœ.V. Çatalyürek, C. Chang, A. Sussman, J.H. Saltz, 2001, "Exploration and Visualization of large data sets with the Active Data Repository." IEEE Computer Graphics and Applications 21, no. 4, 24 - 33.
  • Kurc,T; Catalyurek,U; Chang,C,L; Sussman,A; Saltz,J, 2001, "Visualization of large data sets with the active data repository." IEEE COMPUTER GRAPHICS AND APPLICATIONS 21, no. 4, 24 - 33.
  • M.D. Beynon, T.M. Kurc, Ü.V. Çatalyürek, C. Chang, A. Sussman, J. Saltz, 2001, "Distributed processing of very large datasets with DataCutter." Parallel Computing 27, no. 11, 1457 - 1478.

1999

  • Ãœ.V. Çatalyürek, C. Aykanat, 1999, "Hypergraph-partitioning-based decomposition for parallel sparse-matrix vector multiplication.." IEEE Transactions on Parallel and Distributed Systems 10, no. 7, 673 - 93.
  • Catalyurek,U,V; Aykanat,C, 1999, "Hypergraph-partitioning-based decomposition for parallel sparse-matrix vector multiplication." IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS 10, no. 7, 673 - 693.

Presentations

  • "Hypergraph-Partitioning Approaches for Workload Decomposition." 2002, Albuquerque,
  • "Dataflow Frameworks for Heterogeneous systems." 2010,
  • "Exploiting Geometry and Adjacencies in Mesh Partitioning." 2012, Presented at SIAM Conference on Parallel Processing for Scientific Computing, Savannah,
  • "Improving Performance of Multiple Sequence Alignment Analysis in Multi-client Environments." 2002, Presented at Medical Informatics Group, Columbus,
  • "Hypergraph Models for Load Balancing Irregular Applications." 2004, Presented at Mini-Symposium on Load Balancing for Emerging Applications, in SIAM Conference of Parallel Processing for Scientific Computing, San Francisco,
  • "Use of the Teragrid for Sub-surface Modeling and Oil Reservoir Management Studies." 2006, Presented at Teragrid 2006, Indianapolis,
  • "Parallel Distance-2 Coloring." 2008, Presented at Workshop on Combinatorial Scientific Computing and Petascale Simulations,
  • "Partitioning Spatially Located Load with Rectangles." 2010, Albuquerque,
  • "STORM (Overview)." 2005, Presented at First DIALOGUE Workshop: Applications-Driven Issues in Data Grids, Columbus,
  • "Parallel Hypergraph Partitioning for Scientific Computing." 2005, Utrecht, NL|NLD
  • "Tutorial: The Zoltan Toolkit." 2008, Presented at Workshop on Combinatorial Scientific Computing & Petascale Simulations, Santa Fe,
  • "Dynamic Load Balancing & Matrix Partitioning." 2008, Presented at Work on Combinatorial Scientific Computing & Petascale Simulations, Santa Fe,
  • "Getting Started with Zoltan: A Short Tutorial." 2009, Presented at Dagstuhl Combinatorial Scientific Computing Seminar, DE|DEU
  • "Parallel Computing Strategies for Sequence Mapping of NGS Data." 2009, Presented at 9th International Conference for the Critical Assesment of Massive Data Analysis,
  • "Processing of Large-Scale Biomedical Images on a Cluster of Multi-Core CPUs and GPUs." 2009, Presented at Ohio Supercomputer Center Workshop on Accelerating simulations with NVIDIA GPU hardware, Columbus,
  • "Parallel Short Sequence Mapping for High Throughput Genome Sequencing." 2009, Presented at Dagstuhl Combinatorial Scientific Computing Seminar, Wadern, DE|DEU
  • "Combinatorial Scientific Computing & ADAPT & Scientific Computinng on Emerging Architectures." 2009,
  • "Partitioning Spatially Located Load with Rectangles: Algorithms and Simulations." 2010, Presented at New Challenges on Scheduling Theory Workshop, FR|FRA
  • "Optimizing the maximum stretch of online tasks on a parallel system without preemption." 2010, Presented at 3rd 'Scheduling in Aussois' Workshop, FR|FRA
  • "Considerations on Parallel Graph Coloring Algorithms." 2012, Presented at SIAM Conference on Parallel Processing for Scientific Computing, Savannah,
  • "STORM." 2006, Presented at Second DIALOGUE Workshop: Applications-Driven Issues in Data Grids, Edinburgh,
  • "Application of Grid Technology in Cancer Research: Middleware and Tools." 2006, Presented at International Advance Research Workshop on High Performance Computing and Grids, Cetraro, IT|ITA
  • "Multi-Objective Scheduling of Streaming Workflows." 2008, Presented at 2nd Scheduling in Aussois Workshop, Aussois, FR|FRA
  • "How Scalable is Your Load Balancer?." 2007, Presented at SIAM Conference on Computational Science and Engineering (SIAM CSE'07), Costa Mesa,
  • "Service-oriented Bioscience Cluster at OSC." 2008, Presented at Software Applications and Codes Meeting for the Ohio Supercomputer Center Bioscience Cluster Expansion, Columbus,
  • "Load-Balancing Spatially Located Computations using Rectangular Partitions." 2012, Presented at SIAM Conference on Parallel Processing & Scientific Computing (PP12), Atlanta,
  • "Middleware Infastructure for Large-Scale Data Management." 2004, Presented at ASC VIEWS Alliance Forum, Salt Lake City,
  • "Combinatorial Scientific Computing on Petascale Machines." 2007, Presented at Petascale Applications Symposium,
  • "Service Oriented Access to HPC Resources: A Case Study- OSC Bioscience Cluster." 2008, Presented at SC08 Workshop on Supercomputing, Multicore Architectures, and Biomedical Informatics, in conjunction with Supercomputing 2008, Austin,
  • "Benchmarking Short Sequence Alignment Tools." 2010, Presented at Bioinformatics, 2010 Ohio Collaborative Conference,
  • "Virtual Microscope." 2002, Columbus,
  • "Processing of Large-Scale Biomedical Images on a Cluster of Multi-Core CPUs and GPUs." 2008, Presented at International Advanced Research Workshop on High Performance Computing and Grids, Cetraro, IT|ITA
  • "Partitioning Sparse Matrices." 2009, Presented at Minisymposium on Combinatorial Scientific Computing and CS&E, SIAM Conference on Computational Science & Engineering (CSE09), Miami,
  • "Task Scheduling for Data-Intensive Tasks with Batch-shared I/O." 2007, Columbus,
  • "Combinatorial Problems in High-Performance Computing: Partitioning." 2009, Presented at Dagstuhl Combinatorial Scientific Computing Seminar,
  • "Hypergraph-Based Dynamic Load Balancing for Adaptive Scientific Computations." 2007, Presented at Minisymposium on Combinatorial Scientific Computing, 6th International Congress on Industrial and Applied Mathematics (ICIAM'07), Zurich, CH|CHE
  • "Runtime and Compiler Support for Large Scale Data Driven Science." 2004, Livermore,
  • "Supporting Large Scale Data Driven Science in Distributed Environments." 2005, Presented at Minisymposium on Distributed Data Management Infrastructures for Scalable Computational Science and Engineering Applications, SIAM Conference on Computational Science and Engineering, Orlando,

Papers in Proceedings

2012

  • Ãœ.V. Çatalyürek, K. Kaya, J. Langguth, and B. Uçar "A Divisive clustering technique for maximizing the modularity." in 10th DIMACS Implementation Challenge - Graph Partitioning and Graph Clustering. Atlanta, (2 2012).
  • Ãœ.V. Çatalyürek, M. Deveci, K. Kaya, and B. Uçar "UMPa: A Multi-objective, multi-level partitioner for communication minimization." in 10th DIMACS Implementation Challenge - Graph Partitioning and Graph Clustering. Atlanta, (2 2012).
  • Ãœ.V. Çatalyürek, M. Deveci, K. Kaya, and B. Uçar "Multithreaded Clustering for Multi-level Hypergraph Partitioning." in 26th IEEE International Parallel & Distributed Processing Symposium (IPDPS’12). Shanghai, (5 2012).
  • E. Saule and Ãœ.V. Çatalyürek "An Early Evaluation of the Scalability of Graph Algorithms on the Intel MIC Architecture." in 26th International Symposium on Parallel and Distributed Processing, Workshops and PhD Forum (IPDPSW), Workshop on Multithreaded Architectures and Applications (MTAAP). Shanghai, (5 2012).
  • A.E. Sariyüce, E. Saule and Ãœ.V. Çatalyürek "Scalable Hybrid Implementation of Graph Coloring using MPI and OpenMP." in 26th International Symposium on Parallel and Distributed Processing, Workshops and PhD Forum (IPDPSW), Workshop on Parallel Computing and Optimization (PCO’12). Shanghai, (5 2012).
  • K. Kaya, E. Saule, O. Küçüktunç, Ãœ.V. Çatalyürek "Algorithms for Offline Tracking of Connected Components in Large Evolving Networks." in Workshop on Dynamic Network Analysis (DNA-SDM). Anaheim, (4 2012).

2011

  • L. Cooper, J. Saltz, U.V. Catalyurek, K. Huang "Acceleration of Point Correlation Function Calculation for Pathology Image Segmentation." in IEEE Health Informatics and Systems Biology Conference. (7 2011).
  • A. Hatem, D. Bozdag, and Ãœ.V. Çatalyürek "Benchmarking Short Sequence Mapping Tools." in IEEE International Conference on Bioinformatics and Biomedicine (BIBM11). (1 2011).
  • A.E. Sariyuce, E. Saule and U.V. Catalyurek "Improving Graph Coloring on Distributed Memory Parallel Computers." in Proceedings of 18th Annual International Conference on High Performance Computing (HiPC 2011). (1 2011).
  • U.V. Catalyurek, K. Kaya, and B. Ucar "Integrated Data Placement and Task Assignment for Scientific Workflows in Clouds." in 20th International Symposium on High Performance Distributed Computing (HPDC 2011), The Fourth International Workshop on Data Intensive Distributed Computing (DIDC 2011). (1 2011).
  • D.M. Osborn, D. Mandelli, K. Metzroth, T. Aldemir, R. Denning and Ãœ.V. Çatalyürek "A dynamic level 2 PRA using ADAPT-MELCOR." in Advances in Safety, Reliability and Risk Managemen, Proceedings of the 20th European Safety and Reliability (ESREL). (9 2011). 269 - 276.
  • E. Saule, E.Ö. Bas and Ãœ.V. Çatalyürek "Partitioning Spatially Located Computations using Rectangles." in Proceedings of 25th IEEE International Parallel & Distributed Processing Symposium (IPDPS’11). (5 2011).
  • U.V. Catalyurek, F. Dobrian, A. Gebremedhin, M. Halappanavar, and A. Pothen "Distributed-Memory Parallel Algorithms for Matching and Coloring." in 2011 International Symposium on Parallel and Distributed Processing, Workshops and PhD Forum (IPDPSW), Workshop on Parallel Computing and Optimization (PCO’11). (5 2011).
  • H.M. Aktulga, C. Yang, U.V. Catalyurek, P. Maris, J.P. Vary, and E. G. Ng "On Reducing I/O Overheads in Large-Scale Invariant Subspace Projections." in Workshop on Algorithms and Programming Tools for Next-Generation High-Performance Scientific Software (HPSS 2011), in conjunction with the Euro-Par. Bordeaux, (1 2011).

2010

  • E. Saule, D. Bozdag, U.V. Catalyurek "A Moldable Online Scheduling Algorithm and Its Application to Parallel Short Sequence Mapping." in 15th International Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP 2010), in conjunction with IPDPS. (4 2010).
  • F. Igual, R. Mayo, T. Hartley, Ãœ.V. Çatalyürek, A. Ruiz, and M. Ujaldón "Exploring the GPU for Enhancing Parallelism on Color and Texture Analysis." in 14th International Conference on Parallel Computing (ParCo2009). (1 2010). 299 - 306.
  • T.D.R. Hartley, E. Saule and U.V. Catalyurek "Automatic Dataflow Application Tuning for Heterogeneous Systems." in Proceedings of 17th Annual International Conference on High Performance Computing (HiPC 2010). (12 2010).
  • D. Bozdag, A. Hatem, U.V. Catalyurek "Exploring Parallelism in Short Sequence Mapping Using Burrows-Wheeler Transform." in 24th International Parallel and Distributed Processing Symposium (IPDPS), 9th IEEE International Workshop on High Performance Computational Biology. (4 2010).
  • G. Teodoro, T. Hartley, Ãœ.V. Çatalyürek, and R. Ferreira "Run-time optimizations for replicated dataflows on heterogeneous environments." in The ACM International Symposium on High Performance Distributed Computing (HPDC). (6 2010).
  • B. Ucar, U.V. Catalyurek "On scalability of hypergraph models for sparse matrix partitioning." in PDP 2010: 18th Euromicro International Conference on Parallel, Distributed and Network-Based Computing. (1 2010).
  • O. Sertel, Ãœ.V. Çatalyürek, G. Lozanski, A. Shanaah, and M.N. Gurcan "An Image Analysis Approach for Detecting Malignant Cells in Digitized H&E-stained Histology Images of Follicular Lymphoma." in 20th International Conference on Pattern Recognition (ICPR). (8 2010). 273 - 276.
  • D. Bozdag, A. Kumar, and Ãœ.V. Çatalyürek "Comparative Analysis of Biclustering Algorithms." in ACM International Conference On Bioinformatics and Computational Biology (ACM-BCB). (8 2010).

2009

  • D. Bozdag, J.D. Parvin, U.V. Catalyurek "A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets." in First International Conference on Bioinformatics and Computational Biology (BICoB). (1 2009).
  • Catalyurek,Umit,V; Boman,Erik,G; Devine,Karen,D; Bozdag,Doruk; Heaphy,Robert,T; Riesen,Lee,Ann "A repartitioning hypergraph model for dynamic load balancing." JOURNAL: "JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING." in 21st IEEE International Parallel and Distributed Processing Symposium (IPDPS 2007). SAN DIEGO, (8 2009). 711 - 724.
  • T. Hartley, A.R. Fasih, C.A. Berdanier, F. Ozguner, U.V. Catalyurek "Investigating the Use of GPU-Accelerated Nodes for SAR Image Formation." in 2009 IEEE International Conference on Cluster Computing, Workshop on Parallel Programming on Accelerator Clusters (PPAC). (1 2009).
  • S. Naranayan, U.V. Catalyurek, T.M. Kurc, J.H. Saltz "Parallel materialization of large ABoxes." in ACM Symposium on Applied Computing (SAC). Honolulu, (1 2009). 1257 - 1261.
  • Bozdag,Doruk; Parvin,Jeffrey,D; Catalyurek,Umit,V "A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets." JOURNAL: "BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, PROCEEDINGS." in 1st International Conference on Bioinformatics and Computational Biology. BERLIN, (1 2009). 151 - 163.
  • D. Bozdag, C.C. Barbacioru, U.V. Catalyurek "Parallel Short Sequence Mapping for High Throughput Genome Sequencing." in 23rd IEEE International PArallel & Distributed Processing Symposium (IPDPS09). (5 2009).
  • Ozer,Hatice,Gulcin; Bozdag,Doruk; Camerlengo,Terry; Wu,Jiejun; Huang,Yi-Wen; Hartley,Tim; Parvin,Jeffrey,D; Huang,Tim; Catalyurek,Umit,V; Huang,Kun "A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments." JOURNAL: "BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, PROCEEDINGS." in 1st International Conference on Bioinformatics and Computational Biology. BERLIN, (1 2009). 320 - 330.
  • T. Hartley, U.V. Catalyurek "A Component-Based Framework for the Cell Broadband Engine." in 23rd International Parallel and Distributed Processing Symposium (IPDPS09); the 18th Heterogeneous Computing Workshop. (5 2009).
  • H.G. Ozer, D. Bozdag, T. Camerlengo, J. Wu, Y.W. Huang, T. Hartley, J.D. Parvin, T. Huang, U.V. Catalyurek, K. Huang "A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments." in First International Conference on Bioinformatics and Computational Biology (BICoB). (1 2009).
  • G. Teodoro, R. Sachetto, O. Sertel, M.N. Gurcan, W. Meira Jr., U.V. Catalyurek, R. Ferreira "Coordinating the Use of GPU and CPU for Improving Performance of Compute Intensive Applications." in 2009 IEEE International Conference on Cluster Computing. (1 2009).

2008

  • G. Khanna, U.V. Catalyurek, T. Kurc, R. Kettimuthu, P. Sadayappan, J. Saltz "A Dynamic Scheduling Approach for Coordinated Wide-Area Data Trasnfers Using GridFTP." in 22nd IEEE International Parallel & Distributed Processing Symposium (IPDPS08). (4 2008).
  • J.H. Saltz, S. Oster, S. Hastings, S. Langella, R. Ferreira, J. Permar, A. Sharma, D. Ervin, T. Pan, Ãœ.V. Çatalyürek, and T.M. Kurç "Translational research design templates, Grid computing, and HPC." in IEEE International Symposium on Parallel and Distributed Processing 2008 (IPDPS 2008). (4 2008).
  • Saltz,Joel; Oster,Scott; Hastings,Shannon; Langella,Stephen; Ferreira,Renato; Permar,Justin; Sharma,Ashish; Ervin,David; Pan,Tony; Catalyurek,Umit; Kurc,Tahsin "Translational research design templates, Grid computing, and HPC." JOURNAL: "2008 IEEE INTERNATIONAL SYMPOSIUM ON PARALLEL & DISTRIBUTED PROCESSING, VOLS 1-8." in 10th Workshop on Advances in Parallel and Distributed Computational Models/22nd IEEE International Parallel and Distributed Processing Symposium. NEW YORK, (1 2008). 1 - 15.
  • O. Sertel, J. Kong, U.V. Catalyurek, J.H. Saltz, M.N. Gurcan, G. Lozanski "Computerized microscopic image analysis of follicular lymphoma." in SPIE Medical Imaging. (2 2008).
  • O. Sertel, J. Kong, G. Lozanski, U.V. Catalyurek, J.H. Saltz, M.N. Gurcan "Texture classification using non-linear color quantization: Application to histopathological image analysis." in Proceedings of IEEE Int. Conf. on Acoustics, Speech, and Signal Processing (ICASSP '08). Las Vegas, (1 2008).
  • Sertel,Olcay; Kong,Jun; Lozanski,Gerard; Shana'ah,Anva; Catalyurek,Umit; Saltz,Joel; Gurcan,Metin "Texture classification using nonlinear color quantization: Application to histopathological image analysis." JOURNAL: "2008 IEEE INTERNATIONAL CONFERENCE ON ACOUSTICS, SPEECH AND SIGNAL PROCESSING, VOLS 1-12." in 33rd IEEE International Conference on Acoustics, Speech and Signal Processing. NEW YORK, (1 2008). 597 - 600.
  • Sertel,Olcay; Kong,Jun; Lozanski,Gerard; Catalyurek,Umit; Saltz,Joel,H; Gurcan,Metin,N "Computerized microscopic image analysis of follicular lymphoma." JOURNAL: "MEDICAL IMAGING 2008: COMPUTER-AIDED DIAGNOSIS, PTS 1 AND 2." in Medical Imaging 2008 Conference. BELLINGHAM, (1 2008). 691535 -
  • Khanna,Gaurav; Catalyurek,Umit; Kurc,Tahsin; Kettimuthu,Rajkumar; Sadayappan,P; Saltz,Joel "A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP." JOURNAL: "2008 IEEE INTERNATIONAL SYMPOSIUM ON PARALLEL & DISTRIBUTED PROCESSING, VOLS 1-8." in 10th Workshop on Advances in Parallel and Distributed Computational Models/22nd IEEE International Parallel and Distributed Processing Symposium. NEW YORK, (1 2008). 2011 - 2022.
  • Boman,Erik,G; Bozdag,Doruk; Catalyurek,Umit,V; Devine,Karen,D; Gebremedhin,Assefaw,H; Hovland,Paul,D; Pothen,Alex "Combinatorial algorithms for computational science and engineering." JOURNAL: "SCIDAC 2008: SCIENTIFIC DISCOVERY THROUGH ADVANCED COMPUTING." in 4th Annual Scientific Discovery Through Advanced Computing Conference (SciDAC 2008). BRISTOL, (1 2008). 012071 -
  • F. Igual, R. Mayo, T. Hartley, U.V. Catalyurek, A. Ruiz, M. Ujaldon "Optimizing co-occurrence matrices on graphics processors using sparse representations." in 9th International Workshop on State-of-the-Art in Scientific and Parallel Computing. Trondheim, (5 2008).
  • Sertel,Olcay; Kong,Jun; Shimada,Hiroyuki; Catalyurek,Umit; Saltz,Joel,H; Gurcan,Metin "Computer-aided prognosis of neuroblastoma: Classification of stromal development on whole-slide images." JOURNAL: "MEDICAL IMAGING 2008: COMPUTER-AIDED DIAGNOSIS, PTS 1 AND 2." in Medical Imaging 2008 Conference. BELLINGHAM, (1 2008). 69150P -
  • T. Hartley, U.V. Catalyurek, A. Ruiz, M. Ujaldon, F. Igual, R. Mayo "Biomedical Image Analysis on a Cooperative Cluster of GPUs and Multicores." in Proceedings of 22nd ACM International Conference on Supercomputing (ICS'08). Island of Kos, (6 2008).
  • G. Khanna, U.V. Catalyurek, T. Kurc, R. Kettimuthu, P. Sadayappan, I. Foster, J. Saltz "Using Overlays for Efficient Data Transfer Over Shared Wide-Area Networks." in SC2008 High Performance Computing, Networking, and Storage Conference. (11 2008).
  • Hartley,Timothy,DR; Catalyurek,Umit; Ruiz,Antonio; Igual,Francisco; Mayo,Rafael; Ujaldon,Manuel "Biomedical Image Analysis on a Cooperative Cluster of GPUs and Multicores." JOURNAL: "ICS'08: PROCEEDINGS OF THE 2008 ACM INTERNATIONAL CONFERENCE ON SUPERCOMPUTING." in 22nd ACM International Conference on Supercomputing. NEW YORK, (1 2008). 15 - 25.
  • N. Vydyanathan, U.V. Catalyurek, T.M. Kurc, J.H. Saltz, P. Sadayappan "A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows." in 2008 International Conference on Parallel Processing. (9 2008). 254 - 261.
  • O. Sertel, J. Kong, H. Shimada, U.V. Catalyurek, J.H. Saltz, M.N. Gurcan "Computer-aided prognosis of neuroblastoma: classification of stromal development on whole-slide images." in Proceedings of SPIE Medical Imaging. San Diego, (2 2008).

2007

  • Khanna,Gaurav; Catalyurek,Umit; Kurc,Tahsin; Sadayappan,P; Saltz,Joel "Scheduling file transfers for data-intensive jobs on heterogeneous clusters." JOURNAL: "EURO-PAR 2007 PARALLEL PROCESSING, PROCEEDINGS." in 13th International Euro-Par Conference on Parallel Processing. BERLIN, (1 2007). 214 - 223.
  • T. Tavares, G. Teodoro, T.M. Kurç, R. Ferreira, D. O. G. Neto, W. Meira Jr., Ãœ.V. Çatalyürek, S. Hastings, S. Oster, S. Langella, and J.H. Saltz, "An Efficient and Reliable Scientific Workflow System." in CCGRID 2007. (1 2007). 445 - 452.
  • Khanna,Gaurav; Catalyurek,Umit; Kurc,Tahsin; Sadayappan,P; Saltz,Joel "A data locality aware online scheduling approach for I/O-intensive jobs with file sharing." JOURNAL: "JOB SCHEDULING STRATEGIES FOR PARALLEL PROCESSING." in 12th International Workshop on Job Scheduling Strategies for Parallel Processing. BERLIN, (1 2007). 141 - 160.
  • M.N. Gurcan, J. Kong, O. Sertel, B.B. Cambazoglu, J.H. Saltz, U.V. Catalyurek "Computerized Pathological Image Analysis for Neuroblastoma Prognosis." in 2007 AMIA Annual Symposium. (1 2007).
  • Kurc,Tahsin; Zhang,Xi; Parashar,Manish; Klie,Hector; Wheeler,Mar,F; Catalyurek,Umit; Saltz,Joel "Dynamic data-driven systems approach for simulation based optimizations." JOURNAL: "COMPUTATIONAL SCIENCE - ICCS 2007, PT 1, PROCEEDINGS." in 7th International Conference on Computational Science (ICCS 2007). BERLIN, (1 2007). 1213 - 1221.
  • Weng,Li; Catalyurek,Umit; Kurc,Tahsin; Agrawal,Gagan; Saltz,Joel "Optimizing multiple queries on scientific datasets with partial replicas." JOURNAL: "2007 8TH IEEE/ACM INTERNATIONAL CONFERENCE ON GRID COMPUTING." in 8th IEEE/ACM International Conference on Grid Computing. NEW YORK, (1 2007). 265 - 272.
  • G. Khanna, U.V. Catalyurek, T.M. Kurc, P. Sadayappan, J.H. Saltz "Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters." in Proceedings of Euro-Par, 2007. Rennes, (1 2007).
  • Erdal,Selnur; Catalyurek,Umit,V; Saltz,Joel; Kamal,Jyoti; Gurcan,Metin,N "Flexible patient information search and retrieval framework: Pilot implementation." JOURNAL: "MEDICAL IMAGING 2007: PACS AND IMAGING INFORMATICS." in Medical Imaging 2007 Conference. BELLINGHAM, (1 2007). 65160I -
  • T.M. Kurc, X. Zhang, M. Parashar, H. Klie, M.F. Wheeler, U.V. Catalyurek, J.H. Saltz "Dynamic Data-Driven Systems Approach for Simulation Based Optimizations." in International Conference on Computation Science (1). (1 2007). 1213 - 1221.
  • Tavares,Tulio; Teodoro,George; Kurc,Tahsin; Ferreira,Renato; Guedes,Dorgival; Meira,Wagner; Catalyurek,Umit; Hastings,Shannon; Oster,Scott; Langella,Steve; Saltz,Joel "An efficient and reliable scientific workflow system." JOURNAL: "CCGRID 2007: SEVENTH IEEE INTERNATIONAL SYMPOSIUM ON CLUSTER COMPUTING AND THE GRID." in 7th IEEE International Symposium on Cluster Computing and the Grid. LOS ALAMITOS, (1 2007). 445 - 452.
  • Vydyanathan,Nagavijayalakshmi; Catalyurek,Umit,V; Kurc,Tahsin,M; Sadayappan,Ponnuswamy; Saltz,Joel,H "Toward optimizing latency under throughput constraints for application workflows on clusters." JOURNAL: "EURO-PAR 2007 PARALLEL PROCESSING, PROCEEDINGS." in 13th International Euro-Par Conference on Parallel Processing. BERLIN, (1 2007). 173 - 183.
  • L. Weng, U.V. Catalyurek, T.M. Kurc, G. Agrawal, J.H. Saltz "Optimizing Multiple Queries on Scientific Datasets with Partial Replicas." in Proceedings of the 8th IEEE/ACM International Conference on Grid Computing (GRID 2007). (1 2007).
  • B.B. Cambazoglu, O. Sertel, J. Kong, J.H. Saltz, M.N. Gurcan, U.V. Catalyurek "Efficient Processing of Pathological Images Using the Grid: Computer-Aided Prognosis of Neuroblastoma." in Proceedings of the International Workshop on Challenges of Large Applications in Distributed Environments (CLADE'07). (1 2007).
  • A. Ruiz, O. Sertel, M. Ujaldon, U.V. Catalyurek, J.H. Saltz, M.N. Gurcan "Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma." in Proceedings IEEE International Conference on Bioinformatics and BioMedicine (BIBM'07). (1 2007).
  • N. Vydyanathan, U.V. Catalyurek, T.M. Kurc, J.H. Saltz, P. Sadayappan "Toward Optimizing Latency under Throughput Constraints for Application Workflows on Clusters." in Proceedings of Euro-Par, 2007. Rennes, (1 2007).
  • Boman,Erik,G; Bozdag,Doruk; Catalyurek,Umit,V; Devine,Karen,D; Gebremedhin,Assefaw,H; Hovland,Paul,D; Pothen,Alex; Strout,Michelle,Mills "Enabling high performance computational science through combinatorial algorithms." JOURNAL: "SCIDAC 2007: SCIENTIFIC DISCOVERY THROUGH ADVANCED COMPUTING." in 3rd Annual Scientific Discovery through Advanced Computing Conference (SciDAC 2007). BRISTOL, (1 2007).
  • S. Erdal, U.V. Catalyurek, J.H. Saltz, J. Kamal, M.N. Gurcan "Flexible patient information search and retrieval framework: Pilot Implementation." in PACS and Imaging Informatics, SPIE Symposium on Medical Imaging. (1 2007).
  • Ruiz,Antonio; Sertel,Olcay; Ujaldon,Manuel; Catalyurek,Umit; Saltz,Joel; Gurcan,Metin "Pathological image analysis using the GPU: Stroma classification for neuroblastoma." JOURNAL: "2007 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, PROCEEDINGS." in IEEE International Conference on Bioinformatics and Biomedicine. LOS ALAMITOS, (1 2007). 78 - 85.
  • B. Bansal, U.V. Catalyurek, J. Chame, C. Chen, E. Deelman, Y. Gil, M. Hall, V. Kumar, T.M. Kurc, K. Lerman, A. Nakano, Y. Nelson, J.H. Saltz, A. Sharma, P. Vashishta "Intelligent Optimization of Parallel and Distributed Applications." in 2007 IEEE International Parallel and Distributed Processing Symposium. (4 2007). 300 -
  • V. Kumar, T. Kurc, J. Kong, U.V. Catalyurek, M.N. Gurcan, J.H. Saltz "Performance vs. Accuracy Trade-offs for Large-scale Image Analysis Applications." in Proceedings of the IEEE Cluster 2007. Austin, (1 2007).
  • U.V. Catalyurek, E.G. Boman, K.D. Devine, D. Bozdag, R. Heaphy, L.A. Riesen "Hypergraph-based Dynamic Load Balancing for Adaptive Scientific Computations." in 21st IEEE International Parallel & Distributed Processing Symposium (IPDPS '07). (1 2007).
  • S. Krishnamoorthy, U.V. Catalyurek, J. Nieplocha, A. Rountev, P. Sadayappan "A global address space framework for locality aware scheduling of block-sparse computations." in IPDPS 2007. (4 2007). 312 -

2006

  • K.D. Devine, E.G. Boman, R.T. Heaphy, R.H. Bisseling, U.V. Catalyurek "Parallel Hypergraph Partitioning for Scientific Computing." in 20th IEEE International Parallel and Distributed Processing Symposium (IPDPS '06). Rhodes, (1 2006).
  • S. Krishnamoorthy, U.V. Catalyurek, J. Nieplocha, A. Rountev, P. Sadayappan "Hypergraph Partitioning for Automatic Memory Hierarchy Management." in 2006 ACM/IEEE conference on Supercomputing (SC2006). (11 2006). 34 -
  • D. Ucar, S. Asur, U.V. Catalyurek, S. Parthasarathy "Improving Functional Modularity in Protein-Protein Interactions Graphs Using Hub-induced Subgraphs." in Knowledge Discovery in Databases: PKDD 2006. Berlin, (9 2006). 371 - 382.
  • T. Hartley, U.V. Catalyurek, F. Ozguner, A. Yoo, S. Kohn, K. Henderson "MSSG: A Framework for Massive Scale Semantic Graphs." in Proceedings of 2006 IEEE International Conference on Cluster Computing. Barcelona, (9 2006).
  • L. Weng, U.V. Catalyurek, T.M. Kurc, G. Agrawal, J.H. Saltz "Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries." in 2006 International Conference on Parallel Processing (ICPP-06). (8 2006). 271 - 280.
  • V. Kumar, B. Rutt, T.M. Kurc, U.V. Catalyurek, J.H. Saltz, S. Chow, S. Lamont, M. Martone Large Image Correction and Warping in a Cluster Environment. in Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing. Tampa, http://portal.acm.org/citation.cfmid=1188539, (1 2006).
  • S. Krishnamoorthy, U.V. Catalyurek, J. Nieplocha, P. Sadayappan "An Approach to Locality-Conscious Load Balancing and Transparent Memory Hierarchy Management With a Global-Address-Space Parallel Program Model." in 20th International Parallel and Distributed Processing Symposium (IPDPS '06). Rhodes, (1 2006).
  • N. Vydyanathan, G. Khanna, U.V. Catalyurek, T.M. Kurc, J.H. Saltz, P. Sadayappan "Scheduling of Tasks with Batch-Shared I/O on Heterogeneous Systems." in The 15th Heterogeneous Computing Workshop (HCW 2006). (1 2006).
  • N. Vydyanathan, S. Krishnamoorthy, G. Sabin, U.V. Catalyurek, T.M. Kurc, P. Sadayappan, J.H. Saltz "An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications." in Proceedings of the 2006 International Conference on Parallel Processing (ICPP-06). Columbus, (1 2006). 443 - 450.
  • Hartley,Timothy,DR; Catalyurek,Umit; Ozguner,Fusun; Yoo,Andy; Kohn,Scott; Henderson,Keith "MSSG: A framework for massive-scale semantic graphs." JOURNAL: "2006 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING, VOLS 1 AND 2." in IEEE International Conference on Cluster Computing. NEW YORK, (1 2006). 193 - 202.
  • Rutt,Benjamin; Catalyurek,Umit; Hakobyan,Aram; Metzroth,Kyle; Aldemir,Tunc; Denning,Richard; Dunagan,Sean; Kunsman,David "Distributed dynamic event tree generation for reliability and risk assessment." JOURNAL: "CHALLENGES OF LARGE APPLICATIONS IN DISTRIBUTED ENVIRONMENTS, PROCEEDINGS." in 4th International Workshop on the Challenges of Large Applications in Distributed Environments (CLADE 2006). NEW YORK, (1 2006). 61 - 70.
  • S. Krishnamoorthy, U.V. Catalyurek, J. Nieplocha, A. Rountev, P. Sadayappan "An Extensible Global Address Space Framework with Decoupled Task and Data Abstractions." in 20th International Parallel and Distributed Processing Symposium (IPDPS). (1 2006).
  • Rutt,Benjamin; Kumar,Vijay,S; Pan,Tony; Kurc,Tahsin; Catalyurek,Umit; Saltz,Joel; Wang,Yujun "Distributed out-of-core preprocessing of very large microscopy images for efficient querying." JOURNAL: "2005 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING (CLUSTER)." in IEEE International Conference on Cluster Computing. NEW YORK, (1 2006). 205 - 214.
  • D. Bozdag, U.V. Catalyurek, F. Ozguner "A Task Duplication Based Bottom-Up Scheduling Algorithm for Heterogeneous Environments." in The 15th Heterogeneous Computing Workshop (HCW '06). (1 2006).
  • N. Vydyanathan, S. Krishnamoorthy, G. Sabin, U.V. Catalyurek, T.M. Kurc, P. Sadayappan, J.H. Saltz "Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications." in 2006 IEEE International Conference on Cluster Computing. (9 2006). 1 - 10.
  • G. Khanna, U.V. Catalyurek, T. Kurc, P. Sadayappan, J. Saltz "A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs With File Sharing." in 12th International Workshop on Job Scheduling Strategies. Saint-Malo, France, (6 2006). 141 - 160.
  • S. Narayan, T.M. Kurc, U.V. Catalyurek, J.H. Saltz "On Creating Efficient Object-relational Views of Scientific Datasets." in Proceedings of the 2006 International Conference on Parallel Processing (ICPP-06). Columbus, (8 2006). 551 - 558.
  • G. Khanna, N. Vydyanathan, U.V. Catalyurek, T.M. Kurc, S. Krishnamoorthy, P. Sadayappan, J.H. Saltz "Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O." in 15th IEEE International Symposium on High-Performance Distributed Computing (HPDC-15). Paris, (6 2006). 241 - 252.
  • B. Rutt, U.V. Catalyurek, A. Hakobyan, K. Mezroth, T. Aldemir, R. Denning, S. Dunagan, D. Kunsman "Distributed Dynamic Event Tree Generation for Reliabilty and Risk Assesment." in International Workshop on Challenges of Large Applications in Distributed Environments (CLADE '06). Paris, (6 2006). 61 - 70.
  • Vydyanathan,N; Krishnamoorthy,S; Sabin,G; Catalyurek,U; Kurc,T; Sadayappan,P; Saltz,J "Locality conscious processor allocation and scheduling for mixed parallel applications." JOURNAL: "2006 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING, VOLS 1 AND 2." in IEEE International Conference on Cluster Computing. NEW YORK, (1 2006). 228 - 237.

2005

  • D. Bozdag, U.V. Catalyurek, A.H. Gebremedhin, F. Manne, E.G. Boman, F. Ozguner "A Parallel Distance-2 Graph Coloring Algorithm for Distributed Memory Computers." in 2005 International Conference on High Performance Computing and Communications (HPCC-05). (9 2005).
  • V. Kumar, T.M. Kurc, U.V. Catalyurek, J.H. Saltz "Design and Implementation of a Data Server Using a Peer-to-Peer Storage System." in High Performance Computing Symposium (HPC '05). (1 2005).
  • Bozdag,D; Catalyurek,U; Gebremedhin,A,H; Manne,F; Boman,E,G; Ozguner,F "parallel distance-2 graph coloring algorithm for distributed memory computers." JOURNAL: "HIGH PERFORMANCE COMPUTING AND COMMUNICATIONS, PROCEEDINGS." in 1st International on High Performance Computing and Communications (HPCC 2005). BERLIN, (1 2005). 796 - 806.
  • S. Narayanan, T.M. Kurc, U.V. Catalyurek, J.H. Saltz "Servicing Seismic and Oil Reservoir Simulation Data." in VLBD Workshop on Data Management in Grids. (9 2005).
  • B. Rutt, V.S. Kumar, T. Pan, T.M. Kurc, U.V. Catalyurek, Y. Wang, and J.H. Saltz "Distributed Out-of-core Preprocessing of Very Large Microscopy Images for Efficient Querying." in 2005 IEEE International Conference on Cluster Computing. Boston, Massachusetts, (1 2005).
  • S. Hastings, S. Langella, S. Oster, T.M. Kurc, T. Pan, U.V. Catalyurek, D.A. Janies, J.H. Saltz "Grid-based Management of Biomedical Data using an XML-based Distributed Data Management System." in Proceedings of the 19th Annual ACM Symposium on Applied Computing. (1 2005). 105 - 109.
  • Boman,E,G; Bozdag,D; Catalyurek,U; Gebremedhin,A,H; Manne,F "A scalable parallel graph coloring algorithm for distributed memory computers." JOURNAL: "EURO-PAR 2005 PARALLEL PROCESSING, PROCEEDINGS." in 11th International Euro-Par Conference. BERLIN, (1 2005). 241 - 251.
  • G. Khanna, N. Vydyanathan, T.M. Kurc, U.V. Catalyurek, P. Wyckoff, J.H. Saltz, P. Sadayappan "A Hypergraph Partitioning Based Approach for Scheduling of Tasks with Batch-Shared I/O." in Cluster Computing and Grid 2005 (CCGrid '05). (1 2005). 792 - 799.
  • Parashar,M; Matossian,V; Bangerth,W; Klie,H; Rutt,B; Kurc,T; Catalyurek,U; Saltz,J; Wheeler,M,F "Towards dynamic data-driven optimization of oil well placement." JOURNAL: "COMPUTATIONAL SCIENCE - ICCS 2005, PT 2." in 5th International Conference on Computational Science (ICCS 2005). BERLIN, (1 2005). 656 - 663.
  • L. Weng, U.V. Catalyurek, T.M. Kurc, G. Agrawal, J.H. Saltz "Servicing Range Queries on Multidimensional Datasets with Partial Replicas." in Cluster Computing and Grid 2005 (CCGrid05). (1 2005). 726 - 733.
  • E.G. Boman, D. Bozdag, U.V. Catalyurek, A.H. Gebremedhin, F. Manne "An Efficient Parallel Graph Coloring Algorithm for Distributed Memory Computers." in Proceedings of Euro-Par 2005 Parallel Processing: 11th International Euro-Par Conference. (1 2005). 241 - 250.
  • Narayanan,S; Kurc,T; Catalyurek,U; Saltz,J "Servicing seismic and oil reservoir simulation data through Grid data services." JOURNAL: "DATA MANAGEMENT IN GRIDS." in 1st VLDB Workshop on Data Management in Grids. BERLIN, (1 2005). 129 - 142.
  • Weng,L; AGRAWAL,G; Catalyurek,U; Saltz,J "Supporting SQL-3 aggregations on grid-based data repositories." JOURNAL: "LANGUAGES AND COMPILERS FOR HIGH PERFORMANCE COMPUTING." in 17th International Workshop on Languages and Compilers for High Performance Computing. BERLIN, (1 2005). 283 - 298.
  • A. Yoo, E. Chow, K. Henderson, W. McLendon, B. Hendrickson, U.V. Catalyurek "A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/L." in International Conference for High Performance Computing, Networking, and Storage (SC2005). (11 2005).
  • Ãœ.V. Çatalyürek, S. Hastings, K. Huang, V. S. Kumar, T.M. Kurç, S. Langella, S. Narayanan, S. Oster, T. Pan, B. Rutt, X. Zhang, and J.H. Saltz "Supporting Large-Scale Medical and Scientific Datasets." in International Conference ParCO. (1 2005).
  • S. Narayanan, U.V. Catalyurek, T.M. Kurc, V. Kumar, J.H. Saltz "A Runtime Framework for Partial Replication and Its Application for On-Demand Data Exploration." in High Performance Computing Symposium (HPC '05). (1 2005).
  • M. Parashar, V. Matossian, W. Bangerth, H. Klie, B. Rutt, T.M. Kurc, U.V. Catalyurek, J.H. Saltz, M.F. Wheeler "Towards Dynamic Data-Driven Optimization of Oil Well Placement." in ICCS '05. (4 2005). 656 - 663.
  • D. Bozdag, F. Ozguner, E. Ekici, U.V. Catalyurek "A Task Duplication Based Scheduling Algorithm Using Partial Schedules." in 2005 International Conference on Parallel Processing (ICPP-05). (1 2005). 630 - 637.

2004

  • X. Zhang, T.M. Kurc, T. Pan, U.V. Catalyurek, S. Narayanan, P. Wyckoff, J.H. Saltz "Strategies for Using Additional Resources in Parallel." in 13th IEEE International Symposium on High Performance Distributed Computing (HPDC-13). (6 2004).
  • X. Zhang, T. Pan, U.V. Catalyurek, T.M Kurc, J.H. Saltz "Serving queries to multi-resolution datasets on disk-based storage clusters." in Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid, 2004 (CCGrid 2004). (4 2004). 490 - 498.
  • S. Langella, S. Hastings, S. Oster, T.M. Kurc, U.V. Catalyurek, J.H. Saltz "A Distributed Data Management Middleware for Data-Driven Application Systems." in 2004 IEEE International Conference on Cluster Computing. (9 2004). 267 - 276.
  • Zhang,X; Kurc,T; Pan,T; Catalyurek,U; Narayanan,S; Wyckoff,P; Saltz,J "Strategies for using additional resources in parallel hash-based join algorithms." JOURNAL: "13TH IEEE INTERNATIONAL SYMPOSIUM ON HIGH PERFORMANCE DISTRIBUTED COMPUTING, PROCEEDINGS." in 13th IEEE International Symposium on High Performance Distributed Computing (HPDC-13). NEW YORK, (1 2004). 4 - 13.
  • Zhang,X; Pan,T; Catalyurek,U; Kurc,T; Saltz,J "Serving queries to multi-resolution datasets on disk-based storage clusters." JOURNAL: "2004 IEEE INTERNATIONAL SYMPOSIUM ON CLUSTER COMPUTING AND THE GRID - CCGRID 2004." in 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCG 2004). NEW YORK, (1 2004). 490 - 498.
  • L. Weng, G. Agrawal, U.V. Catalyurek, J.H. Saltz "Supporting SQL-3 Aggregations on Grid-based Data Repositories." in Languages and Compilers for High Performance Computing (LLPC '04). (9 2004). 283 - 298.
  • L. Weng, G. Agrawal, U.V. Catalyurek, T.M. Kurc, S. Narayanan, J.H. Saltz "An Approach for Automatic Data Virtualization." in Proceedings of the 13th IEEE International Symposium on High-Performance Distributed Computing (HPDC-13). (6 2004). 24 - 33.
  • Parashar,M; Klie,H; Catalyurek,U; Kurc,T; Matossian,V; Saltz,J; Wheeler,M,F "Application of grid-enabled technologies for solving optimization problems in data-driven reservoir studies." JOURNAL: "COMPUTATIONAL SCIENCE - ICCS 2004, PT 3, PROCEEDINGS." in 4th International Conference on Computational Science (ICCS 2004). BERLIN, (1 2004). 805 - 812.
  • M. Parashar, H. Klie, U.V. Catalyurek, T.M. Kurc, V. Matossian, J.H Saltz, M.F. Wheeler "Applications of Grid-enabled Technologies for Solving Optimization Problems in Data-Driven Reservior Studies." in Workshop on Distributed Data Driven Applications and Systems (ICCS 2004). Kravkow, (6 2004).
  • N. Vydyanathan, G. Khanna, T.M. Kurc, U.V. Catalyurek, P. Wyckoff, J.H. Saltz, P. Sadayappan "Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O." in Fifth IEEE/ACM International Workshop on Grid Computing, 2004. (1 2004). 235 - 242.

2003

  • J.H. Saltz, U.V. Catalyurek, T.M. Kurc, M. Gray, S. Hastings, S. Langella, S. Narayan, R. Martino, K. Bryant, M. Peszynska, M.F. Wheeler, A. Sussman, M. Beynon, C. Hansen, D. Stredney, D. Sessana "Driving Scientific Applications by Data in Distributed Environments." in Proceedings of the Workshop on Dynamic Data-Driven Application Systems. Melbourne, (6 2003).
  • T.M. Kurc, F. Lee, G. Agrawal, U.V. Catalyurek, R. Ferreira, J.H. Saltz "Optimizing Reduction Computations Distributed Environment." in ACM/IEEE SC2003 Conference. Phoenix, (11 2003).
  • P. Balaji, J. Wu, T.M. Kurc, U.V. Catalyurek, D.K. Panda, J.H. Saltz "Impact of High Performance Sockets on Data Intensive Applications." in Proceedings of the 12th IEEE International Symposium on High Performance Distributed Computing (HPDC-12). (6 2003). 24 - 33.
  • Ãœ.V. Çatalyürek, M. Gray, T.M. Kurç, J.H. Saltz, E. Stahlberg, and R. Ferreira "A Component-based Implementation of Multiple Sequence Alignment." in Proceedings of the 2003 ACM Symposium on Applied Computing, SAC2003. (1 2003). 122 - 126.
  • S. Narayanan, U.V. Catalyurek, T.M. Kurc, X. Zhang, J.H. Saltz "Applying Database Support for Large Scale Data Driven Science in Distributed Environments." in Proceedings of the Fourth International Workshop on Grid Computing. (1 2003). 141 - 148.
  • Saltz,J; Catalyurek,U; Kurc,T; Gray,M; Hastings,S; Langella,S; Narayanan,S; Martino,R; Bryant,S; Peszynska,M; Wheeler,M; Sussman,A; Beynon,M; Hansen,C; Stredney,D; Sessanna,D "Driving scientific applications by data in distributed environments." JOURNAL: "COMPUTATIONAL SCIENCE - ICCS 2003, PT IV, PROCEEDINGS." in International Conference on Computational Science (ICCS 2003). BERLIN, (1 2003). 355 - 364.
  • T. Kurc, S. Hastings, U.V. Catalyurek, J.H. Saltz, J.D. Fleig, B.D. Clymer, H. von Tengg-Kobligk, K.T. Baudendistel, R. Machiraju, M.V Knopp "A Disdtributed Execution Environment for Analysis of DCE-MR Image Datasets." in The Society for Computer Applications in Radiology (SCAR 2003). (1 2003).
  • S. Hastings, T.M. Kurc, S. Langella, U.V. Catalyurek, T. Pan, J.H. Saltz "Image Processing for the Grid: A Toolkit for Building Grid-enabled Image Processing Applications." in Proceedings of the 3rd International Symposium on Cluster Computing and the Grid (CCGrid '03). (1 2003). 36 - 43.

2002

  • H. Andrade, T.M. Kurc, U.V. Catalyurek, A. Sussman, J.H. Saltz "Persistent Caching in a Multiple Query Optimization Framework." in Proceedings of the Sixth Workshop on Languages, Compilers and Run-time Systems for Scalable Computers. (3 2002).
  • M. Beynon, T.M. Kurc, U.V. Catalyurek, A. Sussman, J.H. Saltz "Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems." in Proceedings of 16th International Parallel and Distributed Processing Symposium (IPDPS),The 11th Heterogeneous Computing Workshop. Fort Lauderdale, Florida, (4 2002). 0084 -
  • M. Spencer, R. Ferreira, M. Beynon, T.M. Kurc, U.V. Catalyurek, A. Sussman, J.H. Saltz "Executing Multiple Pipelined Data Analysis Operations in the Grid." in Proceedings of the 2002 ACM/IEEE SC02 Conference. Baltimore, (11 2002).
  • U.V. Catalyurek, E.A. Stahlberg, R.A. Ferreira, J.H. Saltz "Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments." in Proceedings of the First International Workshop on High Performance Computational Biology. Fort Lauderdale, (4 2002). 0183b -

2001

  • U.V. Catalyurek, C. Aykanat "A Hypergraph-Partitioning Approach for Coarse-Grain Decomposition." in Proceedings of the ACM/IEEE SC2001 Conference (SC'01). Denver, (11 2001). 42 -
  • C. Chang, T.M. Kurc, A. Sussman, U.V. Catalyurek, J.H. Saltz "A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation." in Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing. Portsmouth, (3 2001).
  • M. Beynon, A. Sussman, U.V. Catalyurek, T.M. Kurc, J.H. Saltz "Performance Optimization for Data Intensive Grid Applications." in Proceedings of the Third Annual International Workshop on Active Middleware Services (AMS2001). (8 2001). 97 - 105.
  • U.V. Catalyurek, C. Aykanat "A Fine-Grain Hypergraph Model for 2D Decomposition of Sparse Matrices." in Proceedings of International Parallel and Distributed Processing Symposium (IPDPS), 8th International Workshop on Solving Irregularly structured Problems in Parallel (Irregular 2001). San Francisco, (11 2001). 1119 - 1204.
  • Beynon,M,D; Kurc,T; Catalyurek,U; Chang,C,L; Sussman,A; Saltz,J "Distributed processing of very large datasets with DataCutter." JOURNAL: "PARALLEL COMPUTING." in Workshop on Clusters and Computational Grids for Scientific Computing. AMSTERDAM, (10 2001). 1457 - 1478.

1996

  • A. Pinar, U.V. Catalyurek, C. Aykanat, M. Pinar "Decomposing Linear Programs for Parallel Solution." in Lecture Notes in Computer Science. (1 1996). 473 - 482.
  • Ãœ.V. Çatalyürek and C. Aykanat "Decomposing irregularly sparse matrices for parallel matrix-vector multiplications." in Proceedings of the Third International Workshop on Parallel Algorithms for Irregularly Structured Problems. (1 1996). 75 - 86.

1995

  • U.V. Catalyurek, C. Aykanat "A hypergraph model for mapping repeated sparse matrix-vector product computations onto multicomputers." in Proceedings of the International Conference on High Performance Computing (HiPC' 95). Goa, (12 1995).