About Us
Ümit V. Çatalyürek
 Adjunct Professor, SBSBiomedical Informatics

266 Ferst Drive
Georgia Institute of Technology
Atlanta, GA 30332
About
Education
PhD 2000, Bilkent University, Turkey
Areas of interest
Highperformance computing, runtime systems for dataintensive computing, parallel algorithms for scientific and engineering applications, combinatorial scientific computing and biomedical informatics.
Biography
Ümit V. Çatalyürek is a Professor in the Departments of Biomedical Informatics, Electrical & Computer Engineering, and Computer Science & Engineering at the Ohio State University. Dr. Çatalyürek received his Ph.D. in 2000 from Bilkent University, and prior to joining the Ohio State University in 2001, he worked at Johns Hopkins University as a Research Associate and at the University of Maryland as a Visiting Research Scientist. Dr. Çatalyürek is a recipient of NSF CAREER award and primary investigator of several awards from Department of Energy, National Institute of Health, and National Science Foundation. Dr. Çatalyürek currently serves as an Associate Editor for Parallel Computing, an as an editorial board member for IEEE Transactions on Parallel and Distributed Computing, Journal of Parallel and Distributed Computing, and Network Modeling and Analysis in Health Informatics and Bioinformatics. In the past, he also served on the editorial board of SIAM Journal of Scientific Computing. Dr. Çatalyürek was the founding General Chair of 1st ACM International Health Informatics Symposium 2010, Program Chair of 5th ACM Conference on Bioinformatics, Computational Biology and Health Informatics 2014, and Workshops Chair of IPDPS 20102014. He also serves on the program committees and organizing committees of several international conferences. He is a member of ACM, SIAM and senior member of IEEE. Dr. Çatalyürek has coauthored more than 200 peerreviewed articles, invited book chapters and papers. His main research areas are in high performance computing, combinatorial scientific computing and biomedical informatics.
Office
310A Lincoln Tower, ph: 614.292.0914, fax: 614.688.6600, or 316 Dreese Labs, fax: 6142927596
Alternate address
Department of Biomedical Informatics, 250 Lincoln Tower, 1800 Cannon Dr., Columbus, OH 43210
Honors

2011
The runnerup of the poster award. The ACM Conference on Bioinformatics, Computational Biology and Biomedicine.

2010
Best Student Paper Award. The 19th ACM International Symposium on High Performance Distributed Computing (HPDC).

2008
SBS Excellence in Teaching and Research Award. College of Medicine.

2007
NSF CAREER Award. National Science Foundation.

2007
Best paper award in Algorithms track of the 2007 International Parallel and Distributed Processing Symposium (IPDPS 2007)..

1992
Bilkent University Scholarship. Bilkent University.

1987
Third Place in High School Chemistry Contest, Marmara Region. TUBITAK (The Scientific and Technical Research Council of Turkey).

1987
Second Place in High School Math Contest, Marmara Region. TUBITAK (The Scientific and Technical Research Council of Turkey).

1987
Bilkent University Scholarship. Bilkent University.
Books
1999
 Ü.V. Çatalyürek. 1999. "Hypergraph Models for Sparse Matrix Partitioning and Reordering." Ankara: Computer Engineering and Information Science, Bilkent University.
1994
 Ü.V. Çatalyürek. 1994. "A Constructive Multiway circuit Partitioning Algorithm Based on Minimum Degree Ordering." Ankara: Computer Engineering and Information Science, Bilkent University.
Edited Books
2011
 2011. "Contemporary Computing, Proceedings of 4th International Conference, IC3." Berlin: Springer.
2010
 2010. "Proceedings of ACM International Health Informatics Symposium (IHI 2010)." Arlington: ACM.
Chapters
2012
 R.H. Bisseling, B.O. Fagginger Auer, A.J. N. Yzelman, T. van Leeuwen and Ü.V. Çatalyürek. 2012. "Twodimensional approaches to sparse matrix partitioning." In Combinatorial Scientific Computing, edited by U. Naumann, O. Schenk, New York: Chapman & Hall / CRC Press.
 E.G. Boman, Ü.V. Çatalyürek, C. Chevalier K.D. Devine. 2012. "Parallel Partitioning, Coloring, and Ordering for Scientific Computing." In Combinatorial Scientific Computing, edited by U. Naumann, O. Schenk, New York: Chapman & Hall / CRC Press.
2011
 Ü.V. Çatalyürek and C. Aykanat. 2011. "PaToH (Partitioning Tool for Hypegraphs)." In Encyclopedia of Parallel Computing, edited by D. Padua, 1479  1487. NY: Springer.
 Ü.V. Çatalyürek, B. Uçar, and C. Aykanat. 2011. "Hypergraph Partitioning." In Encyclopedia of Parallel Computing, 871  881. NY: Springer.
2010
 Ü.V. Çatalyürek, R. Ferreira, T. D. R. Hartley, R. Sachetto, and G. Teodoro. 2010. "Dataflow Frameworks for Emerging Heterogeneous Architectures and Their Applications to Biomedicine." In Scientific Computing with Multicore and Accelerators, edited by J. Dongarra, D. A. Bader, and J. Kurzak, NY: Chapman & Hall / CRC Press.
2009
 Ü.V. Çatalyürek, D. Bozdag, E.G. Boman, K.D. Devine, R. Heaphy, L.A. Riesen. 2009. "Hypergraphbased Dynamic Partitioning and Load Balancing." In Advanced Computation Infrastructures for Parallel/Distributed Adaptive Applications, edited by M. Parashar, X. Li, S. Chandra, New York: John Wiley & Sons.
 Ü.V. Çatalyürek, T. Hartley, O. Sertel, M. Ujaldón. A. Ruiz, J. Saltz, and M. Gurcan. 2009. "Processing of LargeScale Biomedical Images on a Cluster of MultiCore CPUs and GPUs." In Trends in High Performance and Large Scale Computing, Amsterdam: IOS Press.
2008
 Ü.V. Çatalyürek, S. Narayanan, O. Sertel, B.B. Cambazoglu, T. Pan, A. Sharma, S. Hastings, S. Langella, S. Oster, T. Kurc, M.N. Gurcan, J.H. Saltz. 2008. "Servicebased access to and processing of large scientific datasets." In High Performance Computing (HPC) and Grids in Action:Advances in Parallel Computing, edited by Lucio Grandinetti, Amsterdam: IOS Press.
2005
 T. Pan, D. Cowden, Ü.V. Çatalyürek, S. Jewell, S. Hastings, S. Oster, S. Langella, T. Kurc, J.H. Saltz. 2005. "Virtual Microscopy: Distributed Image Storage, Retrieval, Analysis, and Visualization." In In Parallel Computing in Bioinformatics, edited by Albert Zomaya, John Wiley & Sons.
 M. Ribeiro, T. Kurc, T. Pan, K. Huang, Ü.V. Çatalyürek, X. Zhang, S. Langella, S. Hastings, S., Oster, R. Ferreira, J.H. Saltz. 2005. "Tools for Efficient Subsetting and Pipelined Processing of Large Scale, Distributed Biomedical Image Data." In Grid Computing: The New Frontier of High Performance Computing, 14, edited by Lucio Grandinetti, 403  423. Elsevier Science.
Journal Articles
2012
 E. Saule, D. Bozdag, and U.V. Catalyurek, 2012, "Optimizing the maximum stretch of independent tasks on a cluster: From sequential tasks to moldable tasks." Journal of Parallel and Distributed Computing
 E. Kayaaslan, A. Pinar, Ãœ.V. Ã‡atalyÃ¼rek, and C. Aykanat, 2012, "Partitioning Hypergraphs in Scientific Computing Applications through Vertex Separators on Graphs." SIAM Journal of Scientific Computing
2011
 M. Parashar, H. Klie, T.M. KurÃ§, Ãœ.V. Ã‡atalyÃ¼rek, J.H. Saltz, and M. Wheeler, 2011, "Dynamic Decision and DataDriven Strategies for the Optimal Management of Subsurface GeoSystems." Journal of Algorithms & Computational Technology 5, no. 4, 645  665.
 D.A. Janies, T. Treseder, B. Alexandrov, F. Habib, J.J. Chen, R. Ferreira, Ãœ.V. Ã‡atalyÃ¼rek, A. Varon, W.C. Wheeler, 2011, "The Supramap project: Linking pathogen genomes with geography to fight emergent infectious diseases." Cladistics 27, no. 1, 61  66.
 N. Vydyanathan, Ãœ.V. Ã‡atalyÃ¼rek, T.M. KurÃ§, P. Sadayappan and J.H. Saltz, 2011, "Optimizing latency and Throughput of application workflows on clusters." Parallel Computing 37, no. 1011, 694  712.
 V.J. Vieland, Y. Huang, S.C. Seok, J. Burian, Ãœ.V. Ã‡atalyÃ¼rek, J. Oâ€™Connell, A. Segre, W. ValentineCooper, 2011, "KELVIN: a Software Package for Rigorous Measurement of Statistical Evidence in Human Genetics." Human Heredity 72, no. 4, 276  288.
 F. Igual, R. Mayo, T. Hartley, Ãœ.V. Ã‡atalyÃ¼rek, A. Ruiz, and M. UjaldÃ³n, 2011, "Color and Texture Analysis on Emerging Parallel Architectures." International Journal of High Performance Computing Applications 25, no. 4, 404  427.
 Ãœ.V. Ã‡atalyÃ¼rek, C. Aykanat and E. Kayaaslan, 2011, "Hypergraph PartitioningBased FillReducing Ordering." SIAM Journal of Scientific Computing 33, no. 4, 1996  2023.
 G. Teodoro, T. Hartley, Ãœ.V. Ã‡atalyÃ¼rek, and R. Ferreira, 2011, "Optimizing dataflow applications on heterogeneous environments." Cluster ComputingThe Journal of Networks Software Tools and Applications
2010
 Ãœ.V. Ã‡atalyÃ¼rek, B. Rutt, K. Metzroth, A. Hakobyan, T. Aldemir, R. Denning, S. Dunagan D. Kunsman, 2010, "Development of a codeagnostic computational infrastructure for the dynamic generation of accident progression even trees." Reliability Engineering & System Safety 95, no. 3, 278  294.
 D. Bozdag, Ãœ.V. Ã‡atalyÃ¼rek, A. H. Gebremedhin, F. Manne, E.G. Boman, and F. Ã–zgÃ¼ner, 2010, "Distributedmemory Parallel Algorithms for Distance2 Coloring and Related Problems in Derivative Computation." SIAM Journal of Scientific Computing 4, no. 32, 2418  2446.
 B. Ucar, Ãœ.V. Ã‡atalyÃ¼rek, C. Aykanat, 2010, "A matrix partitioning interface to PaToH in MATLAB." Parallel Computing 36, no. 56, 254  272.
 Ãœ.V. Ã‡atalyÃ¼rek, C. Aykanat, B. Ucar, 2010, "On twodimensional sparse matrix partitioning: Models, Methods, and a Recipe." SIAM Journal of Scientific Computing 32, no. 2, 656  583.
2009
 Sertel,O; Kong,J; Shimada,H; Catalyurek,U,V; Saltz,J,H; Gurcan,M,N, 2009, "Computeraided prognosis of neuroblastoma on wholeslide images: Classification of stromal development." PATTERN RECOGNITION 42, no. 6, 1093  1103.
 Ãœ.V. Ã‡atalyÃ¼rek, E.G. Boman, K.D. Devine, D. Bozdag, R.T. Heaphy, L.A. Riesen, 2009, "A Repartitioning Hypergraph Model for Dynamic Load Balancing." Journal of Parallel and Distributed Computing 69, no. 8, 711  724.
 D. Bozdag, F. Ozguner, Ãœ.V. Ã‡atalyÃ¼rek, 2009, "Compaction of Schedules and a TwoStage Approach for DuplicationBased DAG Scheduling." IEEE Transaction on Parallel and Distributed Systems 20, no. 6, 857  871.
 A. Ruiz, O. Sertel, M. Ujaldon, Ãœ.V. Ã‡atalyÃ¼rek, J.H. Saltz, M.N. Gurcan, 2009, "Stroma Classification for Neuroblastoma on Graphics Processors." Int. J. of Data Mining and Bioinformatics 3, no. 3, 280  298.
 S. Erdal, Ãœ.V. Ã‡atalyÃ¼rek, P.R. Payne, J. Kamal, J.H. Saltz, M.N. Gurcan, 2009, "A KnowledgeAnchored Integrative Image Search and Retrieval System." Journal of Digital Imaging 22, no. 2, 166  182.
 Erdal,Selnur; Catalyurek,Umit,V; Payne,Philip,RO; Saltz,Joel; Kamal,Jyoti; Gurcan,Metin,N, 2009, "A KnowledgeAnchored Integrative Image Search and Retrieval System." JOURNAL OF DIGITAL IMAGING 22, no. 2, 166  182.
 Ruiz,Antonio; Sertel,Olcay; Ujaldon,Manuel; Catalyurek,Umit; Saltz,Joel; Gurcan,Metin,N, 2009, "Stroma classification for neuroblastoma on graphics processors." INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS 3, no. 3, 280  298.
 Vydyanathan,Naga; Krishnamoorthy,Sriram; Sabin,Gerald,M; Catalyurek,Umit,V; Kurc,Tahsin; Sadayappan,Ponnuswamy; Saltz,Joel,H, 2009, "An Integrated Approach to LocalityConscious Processor Allocation and Scheduling of MixedParallel Applications." IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS 20, no. 8, 1158  1172.
 Bozdag,Doruk; Oezguener,Fuesun; Catalyurek,Umit,V, 2009, "Compaction of Schedules and a TwoStage Approach for DuplicationBased DAG Scheduling." IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS 20, no. 6, 857  871.
 O. Sertel, J. Kong, H. Shimada, Ãœ.V. Ã‡atalyÃ¼rek, J.H. Saltz, M.N. Gurcan, 2009, "Computeraided Prognosis of Neuroblastoma on Wholeslide Images: Classification of Stromal Development." Special Issue of Pattern Recognition on Digital Image Processing and Pattern Recognition Techniques for the Detection of Cancer 42, no. 6, 1093  1103.
 Sertel,Olcay; Kong,Jun; Catalyurek,Umit,V; Lozanski,Gerard; Saltz,Joel,H; Gurcan,Metin,N, 2009, "Histopathological Image Analysis Using ModelBased Intermediate Representations and Color Texture: Follicular Lymphoma Grading." JOURNAL OF SIGNAL PROCESSING SYSTEMS FOR SIGNAL IMAGE AND VIDEO TECHNOLOGY 55, no. 13, 169  183.
 O. Sertel, J. Kong, Ãœ.V. Ã‡atalyÃ¼rek, G. Lozanski, J.H. Saltz, M.N. Gurcan, 2009, "Histopathological image analysis using modelbased intermediate representations and color texture: Follicular lymphoma grading." The Journal of Signal Processing Systems for Signal, Image, and Video Technology 55, no. 1, 169  183.
 N. Vydyanathan, S. Krishnamoorthy, G. Sabin, Ãœ.V. Ã‡atalyÃ¼rek, T. Kurc, P. Sadayappan, J. Saltz, 2009, "An Integrated Approach to Locality Conscious PRocessor Allocation and Scheduling of Mixed Parallel Applications." IEEE Transaction on Parallel and Distributed Systems 20, no. 8, 1158  1172.
2008
 Bozdag,Doruk; Gebremedhin,Assefaw,H; Manne,Fredrik; Boman,Erik,G; Catalyurek,Umit,V, 2008, "A framework for scalable greedy coloring on distributedmemory parallel computers." JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING 68, no. 4, 515  535.
 E.G. Boman, D. Bozdag, Ãœ.V. Ã‡atalyÃ¼rek, K.D. Devine, A.H. Gebremedhin, P. Hovland and A. Pothen, 2008, "Combinatorial Algorithms for Computational Science and Engineering." Journal of Physics 125, no. 1, 12071 
 A. Hakobyan, K. Metzroth, T. Aldemir, R. Denning, S. Dunagan, D. Kunsman, B. Rutt, Ãœ.V. Ã‡atalyÃ¼rek, 2008, "Dynamic Generation of Accident Progression Event Trees." Nuclear Engineering and Design 12, no. 238, 3457  3467.
 D. Bozdag, A.H. Gebremedhin, F. Manne, E.G. Boman, Ãœ.V. Ã‡atalyÃ¼rek, 2008, "A Framework for Scalable Greedy Coloring on Distributed Memory Parallel Computers." Journal of Parallel and Distributed Computing 4, no. 68, 515  535.
 de Supinski,Bronis,R; Schulz,Martin; Bulatov,Vasily,V; Cabot,William; Chan,Bor; Cook,Andrew,W; Draegerl,Erik,W; Glosli,James,N; Greenough,Jeffrey,A; Henderson,Keith; Kubota,Alison; Louis,Steve; Miller,Brian,J; Patel,Mehul,V; Spelce,Thomas,E; Streitz,Frederick,H; Williams,Peter,L; Yates,Robert,K; Yoo,Andy; Almasi,George; Bhanot,Gyan; Gara,Alan; Gunnels,John,A; Gupta,Manish; Moreira,Jose; Sexton,James; Walkup,Bob; Archer,Charles; Gygi,Francois; Germann,Timothy,C; Kadau,Kai; Lomdahl,Peter,S; Rendleman,Charles; Welcome,Michael,L; McLendon,William; Hendrickson,Bruce; Franchetti,Franz; Kraig,Stefan; Lorenz,Juergen; Ueberhuber,Christoph,W; Chow,Edmond; Catalyuerek,Uemit, 2008, "Bluegene/L applications: Parallelism on a massive scale." INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS 22, no. 1, 33  51.
 V. Kumar, B. Rutt, T.M Kurc, Ãœ.V. Ã‡atalyÃ¼rek, T. Pan, S. Chow, S. Lamont, M. Martone, J.H. Saltz, 2008, "Largescale Biomedical Image Analysis in Grid Environments." IEEE Transactions on Information Technology in Biomedicine 12, no. 2, 154  161.
 Kumar,Vijay,S; Rutt,Benjamin; Kurc,Tahsin; Catalyurek,Umit,V; Pan,Tony,C; Chow,Sunny; Lamont,Stephan; Martone,Maryann; Saltz,Joel,H, 2008, "Largescale biomedical image analysis in grid environments." IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE 12, no. 2, 154  161.
 J. Saltz, T. Kurc, S. Hastings, S. Langella, S. Oster, D. Ervin, A. Sharma, T. Pan, M. Gurcan, J. Permar, R. Ferreira, P. Payne, Ãœ.V. Ã‡atalyÃ¼rek, E. Caserta, G. Leone, M.C. Ostrowski, R. Madduri, I. Foster, S. Madhavan, K. Buetow, K. Shanbhag, E. Siegel, 2008, "eScience, caGrid, and Translational Biomedical Research." Computer 41, no. 11, 58  66.
 B. R. de Supinski, M. Schulz, V. V. Bulatov, W. Cabot, B. Chan, A. W. Cook, E. W. Draegerl, J. N. Glosli, J. A. Greenough, K. Henderson, A. Kubota, S. Louis, B. J. Miller, M. V. Patel, T. E. Spelce, F. H. Streitz, P. L. Williams, R. K. Yates, A. Yoo, G. Almasi, G. Bhanot, A. Gara, J. A. Gunnels, M. Gupta, J. Moreira, J. Sexton, B. Walkup, C. Archer, F. Gygi, T. C. Germann, K. Kadau, P. S. Lomdahl, C. Rendleman, M. L. Welcome, W. McLendon, B. Hendrickson, F. Franchetti, S. Kraig, J. Lorenz, C. W. Ueberhuber, E. Chow, and Ãœ.V. Ã‡atalyÃ¼rek, 2008, "Bluegene/L applications: Parallelism on a massive scale." International Journal High Perform Computing 22, no. 1, 33  51.
 Saltz,Joel; Kurc,Tahsin; Hastings,Shannon; Langella,Stephen; Oster,Scott; Ervin,David; Sharma,Ashish; Pan,Tony; Gurcan,Metin; Permar,Justin; Ferreira,Renato; Payne,Philip; Catalyurek,Umit; Caserta,Enrico; Leone,Gustavo; Ostrowski,Michael,C; Madduri,Ravi; Foster,Ian; Madhavan,Subhashree; Buetow,Kenneth,H; Shanbhag,Krishnakant; Siegel,Eliot, 2008, "eScience, caGrid, and Translational Biomedical Research." COMPUTER 41, no. 11, 58  ?.
 Hakobyan,Aram; Aldemir,Tunc; Denning,Richard; Dunagan,Sean; Kunsman,David; Rutt,Benjamin; Catalyurek,Umit, 2008, "Dynamic generation of accident progression event trees." NUCLEAR ENGINEERING AND DESIGN 238, no. 12, 3457  3467.
2007
 E.G. Boman, D. Bozdag, Ãœ.V. Ã‡atalyÃ¼rek, K.D. Devine, A.H. Gebremedhin, P.D. Hovland, A. Pothen, M.M Strout, 2007, "Enabling High Performance Computational Science Through Combinatorial Algorithms." Journal of Physics: Conference Series 78, 12058 
 A. Pothen, A.H. Gebremedhin, F. Dobrian, E.G. Boman, K.D. Devine, P.D. Hovland, B. Norris, J. Utke, Ãœ.V. Ã‡atalyÃ¼rek, and M.M. Strout, 2007, "Combinatorial Algorithms for Petascale Science." SciDAC Review
2006
 T.M. Kurc, D.A. Janies, A.D. Johnson, S. Langella, S. Oster, S. Hastings, F. Habib, T. Camerlengo, D. Ervin, Ãœ.V. Ã‡atalyÃ¼rek, J.H. Saltz, 2006, "An XMLbased system for synthesis of data from disparate databases.." Journal of the American Medical Informatics Association : JAMIA 13, no. 3, 289  301.
 Kurc,Tahsin; Janies,Daniel,A; Johnson,Andrew,D; Langella,Stephen; Oster,Scott; Hastings,Shannon; Habib,Farhat; Camerlengo,Terry; Ervin,David; Catalyurek,Umit,V; Saltz,Joel,H, 2006, "An XMLbased system for synthesis of data from disparate databases." JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION 13, no. 3, 289  301.
 Klie,H; Bangerth,W; Gai,X; Wheeler,M,F; Stoffa,P,L; Sen,M; Parashar,M; Catalyurek,U; Saltz,J; Kurc,T, 2006, "Models, methods and middleware for gridenabled multiphysics oil reservoir management." ENGINEERING WITH COMPUTERS 22, no. 34, 349  370.
 H. Klie, W. Bangerth, X. Gai, M.F. Wheeler, P.L. Stoffa, M. Sen, M. Prashar, Ãœ.V. Ã‡atalyÃ¼rek, J.H. Saltz, T.M. Kurc, 2006, "Models, Methods and Middleware for Gridenabled Multiphysics Oil Reservoir Management." Engineering with Computers 22, no. 3, 349  370.
 X. Zhang, B. Rutt, Ãœ.V. Ã‡atalyÃ¼rek, T.M. Kurc, P. Stoffa, M. Sen, J.H. Saltz, 2006, "Supporting Scalable and Distributed Data Subsetting and Aggregation in LargeScale Seismic Data Analysis." The International Journal of High Performance Computing Applictions 20, no. 3, 423  438.
2005
 M. Parashar, H. Klie, Ãœ.V. Ã‡atalyÃ¼rek, T. Kurc, W. Bangerth, V. Matossian, J. Saltz, M.F. Wheeler, 2005, "Application of gridenabled technologies for solving optimization problems in datadriven reservoir studies." Future Generation Computer Systems, International Journal of Grid Computing 21, no. 1, 19  26.
 S. Hastings, M. Ribeiro, S. Langella, S. Oster, Ãœ.V. Ã‡atalyÃ¼rek, T. Pan, K. Huang, R. Ferreira, J.H. Saltz, T. Kurc, 2005, "XML database support for distributed execution of dataintensive scientific workflows." SIGMOD Record 34, no. 3, 50  5.
 Hastings,S; Oster,S; Langella,S; Kurc,T,M; Pan,T; Catalyurek,U,V; Saltz,J,H, 2005, "A gridbased image archival and analysis system." JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION 12, no. 3, 286  295.
 S. Hastings, S. Oster, S. Langella, T.M. Kurc, T. Pan, Ãœ.V. Ã‡atalyÃ¼rek, J.H. Saltz, 2005, "A gridbased image archival and analysis system.." Journal of the American Medical Informatics Association : JAMIA 12, no. 3, 286  95.
 Parashar,M; Klie,H; Catalyurek,U; Kurc,T; Bangerth,W; Matossian,V; Saltz,J; Wheeler,M,F, 2005, "Application of Gridenabled technologies for solving optimization problems in datadriven reservoir studies." FUTURE GENERATION COMPUTER SYSTEMSTHE INTERNATIONAL JOURNAL OF GRID COMPUTING AND ESCIENCE 21, no. 1, 19  26.
 Kurc,T; Catalyurek,U; Zhang,X; Saltz,J; Martino,R; Wheeler,M; Peszynska,M; Sussman,A; Hansen,C; Sen,M; Seifoullaev,R; Stoffa,P; TorresVerdin,C; Parashar,M, 2005, "A simulation and data analysis system for largescale, datadriven oil reservoir simulation studies." CONCURRENCY AND COMPUTATIONPRACTICE & EXPERIENCE 17, no. 11, 1441  1467.
 Hastings,S; Ribeiro,M; Langella,S; Oster,S; Catalyurek,U; Pan,T; Huang,K; Ferreira,R; Saltz,J; Kurc,T, 2005, "XML database support for distributed execution of dataintensive scientific workflows." SIGMOD RECORD 34, no. 3, 50  55.
 T.M. Kurc, Ãœ.V. Ã‡atalyÃ¼rek, X. Zhang, J.H. Saltz, R. Martino, M. Wheeler, M. Peszynska, A. Sussman, C. Hansen, M. Sen, R. Seifoullaev, P. Stoffa, C. TorresVerdin, M. Parashar, 2005, "A simulation and data analysis system for largescale, datadriven oil reservoir simulation studies." Concurrency and Computation Practice & Experience 17, no. 11, 1441  67.
2004
 C. Aykanat, A. Pinar, Ãœ.V. Ã‡atalyÃ¼rek, 2004, "Permuting Sparse Rectangular Matrices into BlockDiagonal Form.." SIAM Journal on Scientific Computing 25, no. 6, 1860  1879.
 Aykanat,C; Pinar,A; Catalyurek,U,V, 2004, "Permuting sparse rectangular matrices into blockdiagonal form." SIAM JOURNAL ON SCIENTIFIC COMPUTING 25, no. 6, 1860  1879.
2003
 Ãœ.V. Ã‡atalyÃ¼rek, M.D. Beynon, C. Chang, T.M. Kurc, A. Sussman, J.H. Saltz, 2003, "The virtual microscope." IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society 7, no. 4, 230  48.
 Catalyurek,U; Beynon,M,D; Chang,C,L; Kurc,T; Sussman,A; Saltz,J, 2003, "The virtual microscope." IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE 7, no. 4, 230  248.
 S. Narayanan, T.M. Kurc, Ãœ.V. Ã‡atalyÃ¼rek, J.H. Saltz, 2003, "Database support for datadriven scientific applications in the grid." Parallel Processing Letters 13, no. 2, 245  271.
2002
 M. Beynon, C. Chialin, Ãœ.V. Ã‡atalyÃ¼rek, T.M. Kurc, A. Sussman, H. Andrade, R.A. Ferreira, J.H. Saltz, 2002, "Processing largescale multidimensional data in parallel and distributed environments." Parallel Computing 28, no. 5, 827  859.
 Beynon,M; Chang,C,L; Catalyurek,U; Kurc,T; Sussman,A; Andrade,H; Ferreira,R; Saltz,J, 2002, "Processing largescale muftidimensional data in parallel and distributed environments." PARALLEL COMPUTING 28, no. 5, 827  859.
2001
 T.M. Kurc, Ãœ.V. Ã‡atalyÃ¼rek, C. Chang, A. Sussman, J.H. Saltz, 2001, "Exploration and Visualization of large data sets with the Active Data Repository." IEEE Computer Graphics and Applications 21, no. 4, 24  33.
 Kurc,T; Catalyurek,U; Chang,C,L; Sussman,A; Saltz,J, 2001, "Visualization of large data sets with the active data repository." IEEE COMPUTER GRAPHICS AND APPLICATIONS 21, no. 4, 24  33.
 M.D. Beynon, T.M. Kurc, Ãœ.V. Ã‡atalyÃ¼rek, C. Chang, A. Sussman, J. Saltz, 2001, "Distributed processing of very large datasets with DataCutter." Parallel Computing 27, no. 11, 1457  1478.
1999
 Ãœ.V. Ã‡atalyÃ¼rek, C. Aykanat, 1999, "Hypergraphpartitioningbased decomposition for parallel sparsematrix vector multiplication.." IEEE Transactions on Parallel and Distributed Systems 10, no. 7, 673  93.
 Catalyurek,U,V; Aykanat,C, 1999, "Hypergraphpartitioningbased decomposition for parallel sparsematrix vector multiplication." IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS 10, no. 7, 673  693.
Presentations
 "HypergraphPartitioning Approaches for Workload Decomposition." 2002, Albuquerque,
 "Dataflow Frameworks for Heterogeneous systems." 2010,
 "Exploiting Geometry and Adjacencies in Mesh Partitioning." 2012, Presented at SIAM Conference on Parallel Processing for Scientific Computing, Savannah,
 "Improving Performance of Multiple Sequence Alignment Analysis in Multiclient Environments." 2002, Presented at Medical Informatics Group, Columbus,
 "Hypergraph Models for Load Balancing Irregular Applications." 2004, Presented at MiniSymposium on Load Balancing for Emerging Applications, in SIAM Conference of Parallel Processing for Scientific Computing, San Francisco,
 "Use of the Teragrid for Subsurface Modeling and Oil Reservoir Management Studies." 2006, Presented at Teragrid 2006, Indianapolis,
 "Parallel Distance2 Coloring." 2008, Presented at Workshop on Combinatorial Scientific Computing and Petascale Simulations,
 "Partitioning Spatially Located Load with Rectangles." 2010, Albuquerque,
 "STORM (Overview)." 2005, Presented at First DIALOGUE Workshop: ApplicationsDriven Issues in Data Grids, Columbus,
 "Parallel Hypergraph Partitioning for Scientific Computing." 2005, Utrecht, NLNLD
 "Tutorial: The Zoltan Toolkit." 2008, Presented at Workshop on Combinatorial Scientific Computing & Petascale Simulations, Santa Fe,
 "Dynamic Load Balancing & Matrix Partitioning." 2008, Presented at Work on Combinatorial Scientific Computing & Petascale Simulations, Santa Fe,
 "Getting Started with Zoltan: A Short Tutorial." 2009, Presented at Dagstuhl Combinatorial Scientific Computing Seminar, DEDEU
 "Parallel Computing Strategies for Sequence Mapping of NGS Data." 2009, Presented at 9th International Conference for the Critical Assesment of Massive Data Analysis,
 "Processing of LargeScale Biomedical Images on a Cluster of MultiCore CPUs and GPUs." 2009, Presented at Ohio Supercomputer Center Workshop on Accelerating simulations with NVIDIA GPU hardware, Columbus,
 "Parallel Short Sequence Mapping for High Throughput Genome Sequencing." 2009, Presented at Dagstuhl Combinatorial Scientific Computing Seminar, Wadern, DEDEU
 "Combinatorial Scientific Computing & ADAPT & Scientific Computinng on Emerging Architectures." 2009,
 "Partitioning Spatially Located Load with Rectangles: Algorithms and Simulations." 2010, Presented at New Challenges on Scheduling Theory Workshop, FRFRA
 "Optimizing the maximum stretch of online tasks on a parallel system without preemption." 2010, Presented at 3rd 'Scheduling in Aussois' Workshop, FRFRA
 "Considerations on Parallel Graph Coloring Algorithms." 2012, Presented at SIAM Conference on Parallel Processing for Scientific Computing, Savannah,
 "STORM." 2006, Presented at Second DIALOGUE Workshop: ApplicationsDriven Issues in Data Grids, Edinburgh,
 "Application of Grid Technology in Cancer Research: Middleware and Tools." 2006, Presented at International Advance Research Workshop on High Performance Computing and Grids, Cetraro, ITITA
 "MultiObjective Scheduling of Streaming Workflows." 2008, Presented at 2nd Scheduling in Aussois Workshop, Aussois, FRFRA
 "How Scalable is Your Load Balancer?." 2007, Presented at SIAM Conference on Computational Science and Engineering (SIAM CSE'07), Costa Mesa,
 "Serviceoriented Bioscience Cluster at OSC." 2008, Presented at Software Applications and Codes Meeting for the Ohio Supercomputer Center Bioscience Cluster Expansion, Columbus,
 "LoadBalancing Spatially Located Computations using Rectangular Partitions." 2012, Presented at SIAM Conference on Parallel Processing & Scientific Computing (PP12), Atlanta,
 "Middleware Infastructure for LargeScale Data Management." 2004, Presented at ASC VIEWS Alliance Forum, Salt Lake City,
 "Combinatorial Scientific Computing on Petascale Machines." 2007, Presented at Petascale Applications Symposium,
 "Service Oriented Access to HPC Resources: A Case Study OSC Bioscience Cluster." 2008, Presented at SC08 Workshop on Supercomputing, Multicore Architectures, and Biomedical Informatics, in conjunction with Supercomputing 2008, Austin,
 "Benchmarking Short Sequence Alignment Tools." 2010, Presented at Bioinformatics, 2010 Ohio Collaborative Conference,
 "Virtual Microscope." 2002, Columbus,
 "Processing of LargeScale Biomedical Images on a Cluster of MultiCore CPUs and GPUs." 2008, Presented at International Advanced Research Workshop on High Performance Computing and Grids, Cetraro, ITITA
 "Partitioning Sparse Matrices." 2009, Presented at Minisymposium on Combinatorial Scientific Computing and CS&E, SIAM Conference on Computational Science & Engineering (CSE09), Miami,
 "Task Scheduling for DataIntensive Tasks with Batchshared I/O." 2007, Columbus,
 "Combinatorial Problems in HighPerformance Computing: Partitioning." 2009, Presented at Dagstuhl Combinatorial Scientific Computing Seminar,
 "HypergraphBased Dynamic Load Balancing for Adaptive Scientific Computations." 2007, Presented at Minisymposium on Combinatorial Scientific Computing, 6th International Congress on Industrial and Applied Mathematics (ICIAM'07), Zurich, CHCHE
 "Runtime and Compiler Support for Large Scale Data Driven Science." 2004, Livermore,
 "Supporting Large Scale Data Driven Science in Distributed Environments." 2005, Presented at Minisymposium on Distributed Data Management Infrastructures for Scalable Computational Science and Engineering Applications, SIAM Conference on Computational Science and Engineering, Orlando,
Papers in Proceedings
2012
 Ü.V. Çatalyürek, K. Kaya, J. Langguth, and B. Uçar "A Divisive clustering technique for maximizing the modularity." in 10th DIMACS Implementation Challenge  Graph Partitioning and Graph Clustering. Atlanta, (2 2012).
 Ü.V. Çatalyürek, M. Deveci, K. Kaya, and B. Uçar "UMPa: A Multiobjective, multilevel partitioner for communication minimization." in 10th DIMACS Implementation Challenge  Graph Partitioning and Graph Clustering. Atlanta, (2 2012).
 Ü.V. Çatalyürek, M. Deveci, K. Kaya, and B. Uçar "Multithreaded Clustering for Multilevel Hypergraph Partitioning." in 26th IEEE International Parallel & Distributed Processing Symposium (IPDPS’12). Shanghai, (5 2012).
 E. Saule and Ü.V. Çatalyürek "An Early Evaluation of the Scalability of Graph Algorithms on the Intel MIC Architecture." in 26th International Symposium on Parallel and Distributed Processing, Workshops and PhD Forum (IPDPSW), Workshop on Multithreaded Architectures and Applications (MTAAP). Shanghai, (5 2012).
 A.E. Sariyüce, E. Saule and Ü.V. Çatalyürek "Scalable Hybrid Implementation of Graph Coloring using MPI and OpenMP." in 26th International Symposium on Parallel and Distributed Processing, Workshops and PhD Forum (IPDPSW), Workshop on Parallel Computing and Optimization (PCO’12). Shanghai, (5 2012).
 K. Kaya, E. Saule, O. Küçüktunç, Ü.V. Çatalyürek "Algorithms for Offline Tracking of Connected Components in Large Evolving Networks." in Workshop on Dynamic Network Analysis (DNASDM). Anaheim, (4 2012).
2011
 L. Cooper, J. Saltz, U.V. Catalyurek, K. Huang "Acceleration of Point Correlation Function Calculation for Pathology Image Segmentation." in IEEE Health Informatics and Systems Biology Conference. (7 2011).
 A. Hatem, D. Bozdag, and Ü.V. Çatalyürek "Benchmarking Short Sequence Mapping Tools." in IEEE International Conference on Bioinformatics and Biomedicine (BIBM11). (1 2011).
 A.E. Sariyuce, E. Saule and U.V. Catalyurek "Improving Graph Coloring on Distributed Memory Parallel Computers." in Proceedings of 18th Annual International Conference on High Performance Computing (HiPC 2011). (1 2011).
 U.V. Catalyurek, K. Kaya, and B. Ucar "Integrated Data Placement and Task Assignment for Scientific Workflows in Clouds." in 20th International Symposium on High Performance Distributed Computing (HPDC 2011), The Fourth International Workshop on Data Intensive Distributed Computing (DIDC 2011). (1 2011).
 D.M. Osborn, D. Mandelli, K. Metzroth, T. Aldemir, R. Denning and Ü.V. Çatalyürek "A dynamic level 2 PRA using ADAPTMELCOR." in Advances in Safety, Reliability and Risk Managemen, Proceedings of the 20th European Safety and Reliability (ESREL). (9 2011). 269  276.
 E. Saule, E.Ö. Bas and Ü.V. Çatalyürek "Partitioning Spatially Located Computations using Rectangles." in Proceedings of 25th IEEE International Parallel & Distributed Processing Symposium (IPDPS’11). (5 2011).
 U.V. Catalyurek, F. Dobrian, A. Gebremedhin, M. Halappanavar, and A. Pothen "DistributedMemory Parallel Algorithms for Matching and Coloring." in 2011 International Symposium on Parallel and Distributed Processing, Workshops and PhD Forum (IPDPSW), Workshop on Parallel Computing and Optimization (PCO’11). (5 2011).
 H.M. Aktulga, C. Yang, U.V. Catalyurek, P. Maris, J.P. Vary, and E. G. Ng "On Reducing I/O Overheads in LargeScale Invariant Subspace Projections." in Workshop on Algorithms and Programming Tools for NextGeneration HighPerformance Scientific Software (HPSS 2011), in conjunction with the EuroPar. Bordeaux, (1 2011).
2010
 E. Saule, D. Bozdag, U.V. Catalyurek "A Moldable Online Scheduling Algorithm and Its Application to Parallel Short Sequence Mapping." in 15th International Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP 2010), in conjunction with IPDPS. (4 2010).
 F. Igual, R. Mayo, T. Hartley, Ü.V. Çatalyürek, A. Ruiz, and M. Ujaldón "Exploring the GPU for Enhancing Parallelism on Color and Texture Analysis." in 14th International Conference on Parallel Computing (ParCo2009). (1 2010). 299  306.
 T.D.R. Hartley, E. Saule and U.V. Catalyurek "Automatic Dataflow Application Tuning for Heterogeneous Systems." in Proceedings of 17th Annual International Conference on High Performance Computing (HiPC 2010). (12 2010).
 D. Bozdag, A. Hatem, U.V. Catalyurek "Exploring Parallelism in Short Sequence Mapping Using BurrowsWheeler Transform." in 24th International Parallel and Distributed Processing Symposium (IPDPS), 9th IEEE International Workshop on High Performance Computational Biology. (4 2010).
 G. Teodoro, T. Hartley, Ü.V. Çatalyürek, and R. Ferreira "Runtime optimizations for replicated dataflows on heterogeneous environments." in The ACM International Symposium on High Performance Distributed Computing (HPDC). (6 2010).
 B. Ucar, U.V. Catalyurek "On scalability of hypergraph models for sparse matrix partitioning." in PDP 2010: 18th Euromicro International Conference on Parallel, Distributed and NetworkBased Computing. (1 2010).
 O. Sertel, Ü.V. Çatalyürek, G. Lozanski, A. Shanaah, and M.N. Gurcan "An Image Analysis Approach for Detecting Malignant Cells in Digitized H&Estained Histology Images of Follicular Lymphoma." in 20th International Conference on Pattern Recognition (ICPR). (8 2010). 273  276.
 D. Bozdag, A. Kumar, and Ü.V. Çatalyürek "Comparative Analysis of Biclustering Algorithms." in ACM International Conference On Bioinformatics and Computational Biology (ACMBCB). (8 2010).
2009
 D. Bozdag, J.D. Parvin, U.V. Catalyurek "A Biclustering Method to Discover Coregulated Genes Using Diverse Gene Expression Datasets." in First International Conference on Bioinformatics and Computational Biology (BICoB). (1 2009).
 Catalyurek,Umit,V; Boman,Erik,G; Devine,Karen,D; Bozdag,Doruk; Heaphy,Robert,T; Riesen,Lee,Ann "A repartitioning hypergraph model for dynamic load balancing." JOURNAL: "JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING." in 21st IEEE International Parallel and Distributed Processing Symposium (IPDPS 2007). SAN DIEGO, (8 2009). 711  724.
 T. Hartley, A.R. Fasih, C.A. Berdanier, F. Ozguner, U.V. Catalyurek "Investigating the Use of GPUAccelerated Nodes for SAR Image Formation." in 2009 IEEE International Conference on Cluster Computing, Workshop on Parallel Programming on Accelerator Clusters (PPAC). (1 2009).
 S. Naranayan, U.V. Catalyurek, T.M. Kurc, J.H. Saltz "Parallel materialization of large ABoxes." in ACM Symposium on Applied Computing (SAC). Honolulu, (1 2009). 1257  1261.
 Bozdag,Doruk; Parvin,Jeffrey,D; Catalyurek,Umit,V "A Biclustering Method to Discover Coregulated Genes Using Diverse Gene Expression Datasets." JOURNAL: "BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, PROCEEDINGS." in 1st International Conference on Bioinformatics and Computational Biology. BERLIN, (1 2009). 151  163.
 D. Bozdag, C.C. Barbacioru, U.V. Catalyurek "Parallel Short Sequence Mapping for High Throughput Genome Sequencing." in 23rd IEEE International PArallel & Distributed Processing Symposium (IPDPS09). (5 2009).
 Ozer,Hatice,Gulcin; Bozdag,Doruk; Camerlengo,Terry; Wu,Jiejun; Huang,YiWen; Hartley,Tim; Parvin,Jeffrey,D; Huang,Tim; Catalyurek,Umit,V; Huang,Kun "A Comprehensive Analysis Workflow for GenomeWide Screening Data from ChIPSequencing Experiments." JOURNAL: "BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, PROCEEDINGS." in 1st International Conference on Bioinformatics and Computational Biology. BERLIN, (1 2009). 320  330.
 T. Hartley, U.V. Catalyurek "A ComponentBased Framework for the Cell Broadband Engine." in 23rd International Parallel and Distributed Processing Symposium (IPDPS09); the 18th Heterogeneous Computing Workshop. (5 2009).
 H.G. Ozer, D. Bozdag, T. Camerlengo, J. Wu, Y.W. Huang, T. Hartley, J.D. Parvin, T. Huang, U.V. Catalyurek, K. Huang "A Comprehensive Analysis Workflow for GenomeWide Screening Data from ChIPSequencing Experiments." in First International Conference on Bioinformatics and Computational Biology (BICoB). (1 2009).
 G. Teodoro, R. Sachetto, O. Sertel, M.N. Gurcan, W. Meira Jr., U.V. Catalyurek, R. Ferreira "Coordinating the Use of GPU and CPU for Improving Performance of Compute Intensive Applications." in 2009 IEEE International Conference on Cluster Computing. (1 2009).
2008
 G. Khanna, U.V. Catalyurek, T. Kurc, R. Kettimuthu, P. Sadayappan, J. Saltz "A Dynamic Scheduling Approach for Coordinated WideArea Data Trasnfers Using GridFTP." in 22nd IEEE International Parallel & Distributed Processing Symposium (IPDPS08). (4 2008).
 J.H. Saltz, S. Oster, S. Hastings, S. Langella, R. Ferreira, J. Permar, A. Sharma, D. Ervin, T. Pan, Ü.V. Çatalyürek, and T.M. Kurç "Translational research design templates, Grid computing, and HPC." in IEEE International Symposium on Parallel and Distributed Processing 2008 (IPDPS 2008). (4 2008).
 Saltz,Joel; Oster,Scott; Hastings,Shannon; Langella,Stephen; Ferreira,Renato; Permar,Justin; Sharma,Ashish; Ervin,David; Pan,Tony; Catalyurek,Umit; Kurc,Tahsin "Translational research design templates, Grid computing, and HPC." JOURNAL: "2008 IEEE INTERNATIONAL SYMPOSIUM ON PARALLEL & DISTRIBUTED PROCESSING, VOLS 18." in 10th Workshop on Advances in Parallel and Distributed Computational Models/22nd IEEE International Parallel and Distributed Processing Symposium. NEW YORK, (1 2008). 1  15.
 O. Sertel, J. Kong, U.V. Catalyurek, J.H. Saltz, M.N. Gurcan, G. Lozanski "Computerized microscopic image analysis of follicular lymphoma." in SPIE Medical Imaging. (2 2008).
 O. Sertel, J. Kong, G. Lozanski, U.V. Catalyurek, J.H. Saltz, M.N. Gurcan "Texture classification using nonlinear color quantization: Application to histopathological image analysis." in Proceedings of IEEE Int. Conf. on Acoustics, Speech, and Signal Processing (ICASSP '08). Las Vegas, (1 2008).
 Sertel,Olcay; Kong,Jun; Lozanski,Gerard; Shana'ah,Anva; Catalyurek,Umit; Saltz,Joel; Gurcan,Metin "Texture classification using nonlinear color quantization: Application to histopathological image analysis." JOURNAL: "2008 IEEE INTERNATIONAL CONFERENCE ON ACOUSTICS, SPEECH AND SIGNAL PROCESSING, VOLS 112." in 33rd IEEE International Conference on Acoustics, Speech and Signal Processing. NEW YORK, (1 2008). 597  600.
 Sertel,Olcay; Kong,Jun; Lozanski,Gerard; Catalyurek,Umit; Saltz,Joel,H; Gurcan,Metin,N "Computerized microscopic image analysis of follicular lymphoma." JOURNAL: "MEDICAL IMAGING 2008: COMPUTERAIDED DIAGNOSIS, PTS 1 AND 2." in Medical Imaging 2008 Conference. BELLINGHAM, (1 2008). 691535 
 Khanna,Gaurav; Catalyurek,Umit; Kurc,Tahsin; Kettimuthu,Rajkumar; Sadayappan,P; Saltz,Joel "A dynamic scheduling approach for coordinated widearea data transfers using GridFTP." JOURNAL: "2008 IEEE INTERNATIONAL SYMPOSIUM ON PARALLEL & DISTRIBUTED PROCESSING, VOLS 18." in 10th Workshop on Advances in Parallel and Distributed Computational Models/22nd IEEE International Parallel and Distributed Processing Symposium. NEW YORK, (1 2008). 2011  2022.
 Boman,Erik,G; Bozdag,Doruk; Catalyurek,Umit,V; Devine,Karen,D; Gebremedhin,Assefaw,H; Hovland,Paul,D; Pothen,Alex "Combinatorial algorithms for computational science and engineering." JOURNAL: "SCIDAC 2008: SCIENTIFIC DISCOVERY THROUGH ADVANCED COMPUTING." in 4th Annual Scientific Discovery Through Advanced Computing Conference (SciDAC 2008). BRISTOL, (1 2008). 012071 
 F. Igual, R. Mayo, T. Hartley, U.V. Catalyurek, A. Ruiz, M. Ujaldon "Optimizing cooccurrence matrices on graphics processors using sparse representations." in 9th International Workshop on StateoftheArt in Scientific and Parallel Computing. Trondheim, (5 2008).
 Sertel,Olcay; Kong,Jun; Shimada,Hiroyuki; Catalyurek,Umit; Saltz,Joel,H; Gurcan,Metin "Computeraided prognosis of neuroblastoma: Classification of stromal development on wholeslide images." JOURNAL: "MEDICAL IMAGING 2008: COMPUTERAIDED DIAGNOSIS, PTS 1 AND 2." in Medical Imaging 2008 Conference. BELLINGHAM, (1 2008). 69150P 
 T. Hartley, U.V. Catalyurek, A. Ruiz, M. Ujaldon, F. Igual, R. Mayo "Biomedical Image Analysis on a Cooperative Cluster of GPUs and Multicores." in Proceedings of 22nd ACM International Conference on Supercomputing (ICS'08). Island of Kos, (6 2008).
 G. Khanna, U.V. Catalyurek, T. Kurc, R. Kettimuthu, P. Sadayappan, I. Foster, J. Saltz "Using Overlays for Efficient Data Transfer Over Shared WideArea Networks." in SC2008 High Performance Computing, Networking, and Storage Conference. (11 2008).
 Hartley,Timothy,DR; Catalyurek,Umit; Ruiz,Antonio; Igual,Francisco; Mayo,Rafael; Ujaldon,Manuel "Biomedical Image Analysis on a Cooperative Cluster of GPUs and Multicores." JOURNAL: "ICS'08: PROCEEDINGS OF THE 2008 ACM INTERNATIONAL CONFERENCE ON SUPERCOMPUTING." in 22nd ACM International Conference on Supercomputing. NEW YORK, (1 2008). 15  25.
 N. Vydyanathan, U.V. Catalyurek, T.M. Kurc, J.H. Saltz, P. Sadayappan "A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows." in 2008 International Conference on Parallel Processing. (9 2008). 254  261.
 O. Sertel, J. Kong, H. Shimada, U.V. Catalyurek, J.H. Saltz, M.N. Gurcan "Computeraided prognosis of neuroblastoma: classification of stromal development on wholeslide images." in Proceedings of SPIE Medical Imaging. San Diego, (2 2008).
2007
 Khanna,Gaurav; Catalyurek,Umit; Kurc,Tahsin; Sadayappan,P; Saltz,Joel "Scheduling file transfers for dataintensive jobs on heterogeneous clusters." JOURNAL: "EUROPAR 2007 PARALLEL PROCESSING, PROCEEDINGS." in 13th International EuroPar Conference on Parallel Processing. BERLIN, (1 2007). 214  223.
 T. Tavares, G. Teodoro, T.M. Kurç, R. Ferreira, D. O. G. Neto, W. Meira Jr., Ü.V. Çatalyürek, S. Hastings, S. Oster, S. Langella, and J.H. Saltz, "An Efficient and Reliable Scientific Workflow System." in CCGRID 2007. (1 2007). 445  452.
 Khanna,Gaurav; Catalyurek,Umit; Kurc,Tahsin; Sadayappan,P; Saltz,Joel "A data locality aware online scheduling approach for I/Ointensive jobs with file sharing." JOURNAL: "JOB SCHEDULING STRATEGIES FOR PARALLEL PROCESSING." in 12th International Workshop on Job Scheduling Strategies for Parallel Processing. BERLIN, (1 2007). 141  160.
 M.N. Gurcan, J. Kong, O. Sertel, B.B. Cambazoglu, J.H. Saltz, U.V. Catalyurek "Computerized Pathological Image Analysis for Neuroblastoma Prognosis." in 2007 AMIA Annual Symposium. (1 2007).
 Kurc,Tahsin; Zhang,Xi; Parashar,Manish; Klie,Hector; Wheeler,Mar,F; Catalyurek,Umit; Saltz,Joel "Dynamic datadriven systems approach for simulation based optimizations." JOURNAL: "COMPUTATIONAL SCIENCE  ICCS 2007, PT 1, PROCEEDINGS." in 7th International Conference on Computational Science (ICCS 2007). BERLIN, (1 2007). 1213  1221.
 Weng,Li; Catalyurek,Umit; Kurc,Tahsin; Agrawal,Gagan; Saltz,Joel "Optimizing multiple queries on scientific datasets with partial replicas." JOURNAL: "2007 8TH IEEE/ACM INTERNATIONAL CONFERENCE ON GRID COMPUTING." in 8th IEEE/ACM International Conference on Grid Computing. NEW YORK, (1 2007). 265  272.
 G. Khanna, U.V. Catalyurek, T.M. Kurc, P. Sadayappan, J.H. Saltz "Scheduling File Transfers for DataIntensive Jobs on Heterogeneous Clusters." in Proceedings of EuroPar, 2007. Rennes, (1 2007).
 Erdal,Selnur; Catalyurek,Umit,V; Saltz,Joel; Kamal,Jyoti; Gurcan,Metin,N "Flexible patient information search and retrieval framework: Pilot implementation." JOURNAL: "MEDICAL IMAGING 2007: PACS AND IMAGING INFORMATICS." in Medical Imaging 2007 Conference. BELLINGHAM, (1 2007). 65160I 
 T.M. Kurc, X. Zhang, M. Parashar, H. Klie, M.F. Wheeler, U.V. Catalyurek, J.H. Saltz "Dynamic DataDriven Systems Approach for Simulation Based Optimizations." in International Conference on Computation Science (1). (1 2007). 1213  1221.
 Tavares,Tulio; Teodoro,George; Kurc,Tahsin; Ferreira,Renato; Guedes,Dorgival; Meira,Wagner; Catalyurek,Umit; Hastings,Shannon; Oster,Scott; Langella,Steve; Saltz,Joel "An efficient and reliable scientific workflow system." JOURNAL: "CCGRID 2007: SEVENTH IEEE INTERNATIONAL SYMPOSIUM ON CLUSTER COMPUTING AND THE GRID." in 7th IEEE International Symposium on Cluster Computing and the Grid. LOS ALAMITOS, (1 2007). 445  452.
 Vydyanathan,Nagavijayalakshmi; Catalyurek,Umit,V; Kurc,Tahsin,M; Sadayappan,Ponnuswamy; Saltz,Joel,H "Toward optimizing latency under throughput constraints for application workflows on clusters." JOURNAL: "EUROPAR 2007 PARALLEL PROCESSING, PROCEEDINGS." in 13th International EuroPar Conference on Parallel Processing. BERLIN, (1 2007). 173  183.
 L. Weng, U.V. Catalyurek, T.M. Kurc, G. Agrawal, J.H. Saltz "Optimizing Multiple Queries on Scientific Datasets with Partial Replicas." in Proceedings of the 8th IEEE/ACM International Conference on Grid Computing (GRID 2007). (1 2007).
 B.B. Cambazoglu, O. Sertel, J. Kong, J.H. Saltz, M.N. Gurcan, U.V. Catalyurek "Efficient Processing of Pathological Images Using the Grid: ComputerAided Prognosis of Neuroblastoma." in Proceedings of the International Workshop on Challenges of Large Applications in Distributed Environments (CLADE'07). (1 2007).
 A. Ruiz, O. Sertel, M. Ujaldon, U.V. Catalyurek, J.H. Saltz, M.N. Gurcan "Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma." in Proceedings IEEE International Conference on Bioinformatics and BioMedicine (BIBM'07). (1 2007).
 N. Vydyanathan, U.V. Catalyurek, T.M. Kurc, J.H. Saltz, P. Sadayappan "Toward Optimizing Latency under Throughput Constraints for Application Workflows on Clusters." in Proceedings of EuroPar, 2007. Rennes, (1 2007).
 Boman,Erik,G; Bozdag,Doruk; Catalyurek,Umit,V; Devine,Karen,D; Gebremedhin,Assefaw,H; Hovland,Paul,D; Pothen,Alex; Strout,Michelle,Mills "Enabling high performance computational science through combinatorial algorithms." JOURNAL: "SCIDAC 2007: SCIENTIFIC DISCOVERY THROUGH ADVANCED COMPUTING." in 3rd Annual Scientific Discovery through Advanced Computing Conference (SciDAC 2007). BRISTOL, (1 2007).
 S. Erdal, U.V. Catalyurek, J.H. Saltz, J. Kamal, M.N. Gurcan "Flexible patient information search and retrieval framework: Pilot Implementation." in PACS and Imaging Informatics, SPIE Symposium on Medical Imaging. (1 2007).
 Ruiz,Antonio; Sertel,Olcay; Ujaldon,Manuel; Catalyurek,Umit; Saltz,Joel; Gurcan,Metin "Pathological image analysis using the GPU: Stroma classification for neuroblastoma." JOURNAL: "2007 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, PROCEEDINGS." in IEEE International Conference on Bioinformatics and Biomedicine. LOS ALAMITOS, (1 2007). 78  85.
 B. Bansal, U.V. Catalyurek, J. Chame, C. Chen, E. Deelman, Y. Gil, M. Hall, V. Kumar, T.M. Kurc, K. Lerman, A. Nakano, Y. Nelson, J.H. Saltz, A. Sharma, P. Vashishta "Intelligent Optimization of Parallel and Distributed Applications." in 2007 IEEE International Parallel and Distributed Processing Symposium. (4 2007). 300 
 V. Kumar, T. Kurc, J. Kong, U.V. Catalyurek, M.N. Gurcan, J.H. Saltz "Performance vs. Accuracy Tradeoffs for Largescale Image Analysis Applications." in Proceedings of the IEEE Cluster 2007. Austin, (1 2007).
 U.V. Catalyurek, E.G. Boman, K.D. Devine, D. Bozdag, R. Heaphy, L.A. Riesen "Hypergraphbased Dynamic Load Balancing for Adaptive Scientific Computations." in 21st IEEE International Parallel & Distributed Processing Symposium (IPDPS '07). (1 2007).
 S. Krishnamoorthy, U.V. Catalyurek, J. Nieplocha, A. Rountev, P. Sadayappan "A global address space framework for locality aware scheduling of blocksparse computations." in IPDPS 2007. (4 2007). 312 
2006
 K.D. Devine, E.G. Boman, R.T. Heaphy, R.H. Bisseling, U.V. Catalyurek "Parallel Hypergraph Partitioning for Scientific Computing." in 20th IEEE International Parallel and Distributed Processing Symposium (IPDPS '06). Rhodes, (1 2006).
 S. Krishnamoorthy, U.V. Catalyurek, J. Nieplocha, A. Rountev, P. Sadayappan "Hypergraph Partitioning for Automatic Memory Hierarchy Management." in 2006 ACM/IEEE conference on Supercomputing (SC2006). (11 2006). 34 
 D. Ucar, S. Asur, U.V. Catalyurek, S. Parthasarathy "Improving Functional Modularity in ProteinProtein Interactions Graphs Using Hubinduced Subgraphs." in Knowledge Discovery in Databases: PKDD 2006. Berlin, (9 2006). 371  382.
 T. Hartley, U.V. Catalyurek, F. Ozguner, A. Yoo, S. Kohn, K. Henderson "MSSG: A Framework for Massive Scale Semantic Graphs." in Proceedings of 2006 IEEE International Conference on Cluster Computing. Barcelona, (9 2006).
 L. Weng, U.V. Catalyurek, T.M. Kurc, G. Agrawal, J.H. Saltz "Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries." in 2006 International Conference on Parallel Processing (ICPP06). (8 2006). 271  280.
 V. Kumar, B. Rutt, T.M. Kurc, U.V. Catalyurek, J.H. Saltz, S. Chow, S. Lamont, M. Martone Large Image Correction and Warping in a Cluster Environment. in Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing. Tampa, http://portal.acm.org/citation.cfmid=1188539, (1 2006).
 S. Krishnamoorthy, U.V. Catalyurek, J. Nieplocha, P. Sadayappan "An Approach to LocalityConscious Load Balancing and Transparent Memory Hierarchy Management With a GlobalAddressSpace Parallel Program Model." in 20th International Parallel and Distributed Processing Symposium (IPDPS '06). Rhodes, (1 2006).
 N. Vydyanathan, G. Khanna, U.V. Catalyurek, T.M. Kurc, J.H. Saltz, P. Sadayappan "Scheduling of Tasks with BatchShared I/O on Heterogeneous Systems." in The 15th Heterogeneous Computing Workshop (HCW 2006). (1 2006).
 N. Vydyanathan, S. Krishnamoorthy, G. Sabin, U.V. Catalyurek, T.M. Kurc, P. Sadayappan, J.H. Saltz "An Integrated Approach for Processor Allocation and Scheduling of MixedParallel Applications." in Proceedings of the 2006 International Conference on Parallel Processing (ICPP06). Columbus, (1 2006). 443  450.
 Hartley,Timothy,DR; Catalyurek,Umit; Ozguner,Fusun; Yoo,Andy; Kohn,Scott; Henderson,Keith "MSSG: A framework for massivescale semantic graphs." JOURNAL: "2006 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING, VOLS 1 AND 2." in IEEE International Conference on Cluster Computing. NEW YORK, (1 2006). 193  202.
 Rutt,Benjamin; Catalyurek,Umit; Hakobyan,Aram; Metzroth,Kyle; Aldemir,Tunc; Denning,Richard; Dunagan,Sean; Kunsman,David "Distributed dynamic event tree generation for reliability and risk assessment." JOURNAL: "CHALLENGES OF LARGE APPLICATIONS IN DISTRIBUTED ENVIRONMENTS, PROCEEDINGS." in 4th International Workshop on the Challenges of Large Applications in Distributed Environments (CLADE 2006). NEW YORK, (1 2006). 61  70.
 S. Krishnamoorthy, U.V. Catalyurek, J. Nieplocha, A. Rountev, P. Sadayappan "An Extensible Global Address Space Framework with Decoupled Task and Data Abstractions." in 20th International Parallel and Distributed Processing Symposium (IPDPS). (1 2006).
 Rutt,Benjamin; Kumar,Vijay,S; Pan,Tony; Kurc,Tahsin; Catalyurek,Umit; Saltz,Joel; Wang,Yujun "Distributed outofcore preprocessing of very large microscopy images for efficient querying." JOURNAL: "2005 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING (CLUSTER)." in IEEE International Conference on Cluster Computing. NEW YORK, (1 2006). 205  214.
 D. Bozdag, U.V. Catalyurek, F. Ozguner "A Task Duplication Based BottomUp Scheduling Algorithm for Heterogeneous Environments." in The 15th Heterogeneous Computing Workshop (HCW '06). (1 2006).
 N. Vydyanathan, S. Krishnamoorthy, G. Sabin, U.V. Catalyurek, T.M. Kurc, P. Sadayappan, J.H. Saltz "Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications." in 2006 IEEE International Conference on Cluster Computing. (9 2006). 1  10.
 G. Khanna, U.V. Catalyurek, T. Kurc, P. Sadayappan, J. Saltz "A Data Locality Aware Online Scheduling Approach for I/OIntensive Jobs With File Sharing." in 12th International Workshop on Job Scheduling Strategies. SaintMalo, France, (6 2006). 141  160.
 S. Narayan, T.M. Kurc, U.V. Catalyurek, J.H. Saltz "On Creating Efficient Objectrelational Views of Scientific Datasets." in Proceedings of the 2006 International Conference on Parallel Processing (ICPP06). Columbus, (8 2006). 551  558.
 G. Khanna, N. Vydyanathan, U.V. Catalyurek, T.M. Kurc, S. Krishnamoorthy, P. Sadayappan, J.H. Saltz "Task Scheduling and File Replication for DataIntensive Jobs with Batchshared I/O." in 15th IEEE International Symposium on HighPerformance Distributed Computing (HPDC15). Paris, (6 2006). 241  252.
 B. Rutt, U.V. Catalyurek, A. Hakobyan, K. Mezroth, T. Aldemir, R. Denning, S. Dunagan, D. Kunsman "Distributed Dynamic Event Tree Generation for Reliabilty and Risk Assesment." in International Workshop on Challenges of Large Applications in Distributed Environments (CLADE '06). Paris, (6 2006). 61  70.
 Vydyanathan,N; Krishnamoorthy,S; Sabin,G; Catalyurek,U; Kurc,T; Sadayappan,P; Saltz,J "Locality conscious processor allocation and scheduling for mixed parallel applications." JOURNAL: "2006 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING, VOLS 1 AND 2." in IEEE International Conference on Cluster Computing. NEW YORK, (1 2006). 228  237.
2005
 D. Bozdag, U.V. Catalyurek, A.H. Gebremedhin, F. Manne, E.G. Boman, F. Ozguner "A Parallel Distance2 Graph Coloring Algorithm for Distributed Memory Computers." in 2005 International Conference on High Performance Computing and Communications (HPCC05). (9 2005).
 V. Kumar, T.M. Kurc, U.V. Catalyurek, J.H. Saltz "Design and Implementation of a Data Server Using a PeertoPeer Storage System." in High Performance Computing Symposium (HPC '05). (1 2005).
 Bozdag,D; Catalyurek,U; Gebremedhin,A,H; Manne,F; Boman,E,G; Ozguner,F "parallel distance2 graph coloring algorithm for distributed memory computers." JOURNAL: "HIGH PERFORMANCE COMPUTING AND COMMUNICATIONS, PROCEEDINGS." in 1st International on High Performance Computing and Communications (HPCC 2005). BERLIN, (1 2005). 796  806.
 S. Narayanan, T.M. Kurc, U.V. Catalyurek, J.H. Saltz "Servicing Seismic and Oil Reservoir Simulation Data." in VLBD Workshop on Data Management in Grids. (9 2005).
 B. Rutt, V.S. Kumar, T. Pan, T.M. Kurc, U.V. Catalyurek, Y. Wang, and J.H. Saltz "Distributed Outofcore Preprocessing of Very Large Microscopy Images for Efficient Querying." in 2005 IEEE International Conference on Cluster Computing. Boston, Massachusetts, (1 2005).
 S. Hastings, S. Langella, S. Oster, T.M. Kurc, T. Pan, U.V. Catalyurek, D.A. Janies, J.H. Saltz "Gridbased Management of Biomedical Data using an XMLbased Distributed Data Management System." in Proceedings of the 19th Annual ACM Symposium on Applied Computing. (1 2005). 105  109.
 Boman,E,G; Bozdag,D; Catalyurek,U; Gebremedhin,A,H; Manne,F "A scalable parallel graph coloring algorithm for distributed memory computers." JOURNAL: "EUROPAR 2005 PARALLEL PROCESSING, PROCEEDINGS." in 11th International EuroPar Conference. BERLIN, (1 2005). 241  251.
 G. Khanna, N. Vydyanathan, T.M. Kurc, U.V. Catalyurek, P. Wyckoff, J.H. Saltz, P. Sadayappan "A Hypergraph Partitioning Based Approach for Scheduling of Tasks with BatchShared I/O." in Cluster Computing and Grid 2005 (CCGrid '05). (1 2005). 792  799.
 Parashar,M; Matossian,V; Bangerth,W; Klie,H; Rutt,B; Kurc,T; Catalyurek,U; Saltz,J; Wheeler,M,F "Towards dynamic datadriven optimization of oil well placement." JOURNAL: "COMPUTATIONAL SCIENCE  ICCS 2005, PT 2." in 5th International Conference on Computational Science (ICCS 2005). BERLIN, (1 2005). 656  663.
 L. Weng, U.V. Catalyurek, T.M. Kurc, G. Agrawal, J.H. Saltz "Servicing Range Queries on Multidimensional Datasets with Partial Replicas." in Cluster Computing and Grid 2005 (CCGrid05). (1 2005). 726  733.
 E.G. Boman, D. Bozdag, U.V. Catalyurek, A.H. Gebremedhin, F. Manne "An Efficient Parallel Graph Coloring Algorithm for Distributed Memory Computers." in Proceedings of EuroPar 2005 Parallel Processing: 11th International EuroPar Conference. (1 2005). 241  250.
 Narayanan,S; Kurc,T; Catalyurek,U; Saltz,J "Servicing seismic and oil reservoir simulation data through Grid data services." JOURNAL: "DATA MANAGEMENT IN GRIDS." in 1st VLDB Workshop on Data Management in Grids. BERLIN, (1 2005). 129  142.
 Weng,L; AGRAWAL,G; Catalyurek,U; Saltz,J "Supporting SQL3 aggregations on gridbased data repositories." JOURNAL: "LANGUAGES AND COMPILERS FOR HIGH PERFORMANCE COMPUTING." in 17th International Workshop on Languages and Compilers for High Performance Computing. BERLIN, (1 2005). 283  298.
 A. Yoo, E. Chow, K. Henderson, W. McLendon, B. Hendrickson, U.V. Catalyurek "A Scalable Distributed Parallel BreadthFirst Search Algorithm on BlueGene/L." in International Conference for High Performance Computing, Networking, and Storage (SC2005). (11 2005).
 Ü.V. Çatalyürek, S. Hastings, K. Huang, V. S. Kumar, T.M. Kurç, S. Langella, S. Narayanan, S. Oster, T. Pan, B. Rutt, X. Zhang, and J.H. Saltz "Supporting LargeScale Medical and Scientific Datasets." in International Conference ParCO. (1 2005).
 S. Narayanan, U.V. Catalyurek, T.M. Kurc, V. Kumar, J.H. Saltz "A Runtime Framework for Partial Replication and Its Application for OnDemand Data Exploration." in High Performance Computing Symposium (HPC '05). (1 2005).
 M. Parashar, V. Matossian, W. Bangerth, H. Klie, B. Rutt, T.M. Kurc, U.V. Catalyurek, J.H. Saltz, M.F. Wheeler "Towards Dynamic DataDriven Optimization of Oil Well Placement." in ICCS '05. (4 2005). 656  663.
 D. Bozdag, F. Ozguner, E. Ekici, U.V. Catalyurek "A Task Duplication Based Scheduling Algorithm Using Partial Schedules." in 2005 International Conference on Parallel Processing (ICPP05). (1 2005). 630  637.
2004
 X. Zhang, T.M. Kurc, T. Pan, U.V. Catalyurek, S. Narayanan, P. Wyckoff, J.H. Saltz "Strategies for Using Additional Resources in Parallel." in 13th IEEE International Symposium on High Performance Distributed Computing (HPDC13). (6 2004).
 X. Zhang, T. Pan, U.V. Catalyurek, T.M Kurc, J.H. Saltz "Serving queries to multiresolution datasets on diskbased storage clusters." in Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid, 2004 (CCGrid 2004). (4 2004). 490  498.
 S. Langella, S. Hastings, S. Oster, T.M. Kurc, U.V. Catalyurek, J.H. Saltz "A Distributed Data Management Middleware for DataDriven Application Systems." in 2004 IEEE International Conference on Cluster Computing. (9 2004). 267  276.
 Zhang,X; Kurc,T; Pan,T; Catalyurek,U; Narayanan,S; Wyckoff,P; Saltz,J "Strategies for using additional resources in parallel hashbased join algorithms." JOURNAL: "13TH IEEE INTERNATIONAL SYMPOSIUM ON HIGH PERFORMANCE DISTRIBUTED COMPUTING, PROCEEDINGS." in 13th IEEE International Symposium on High Performance Distributed Computing (HPDC13). NEW YORK, (1 2004). 4  13.
 Zhang,X; Pan,T; Catalyurek,U; Kurc,T; Saltz,J "Serving queries to multiresolution datasets on diskbased storage clusters." JOURNAL: "2004 IEEE INTERNATIONAL SYMPOSIUM ON CLUSTER COMPUTING AND THE GRID  CCGRID 2004." in 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCG 2004). NEW YORK, (1 2004). 490  498.
 L. Weng, G. Agrawal, U.V. Catalyurek, J.H. Saltz "Supporting SQL3 Aggregations on Gridbased Data Repositories." in Languages and Compilers for High Performance Computing (LLPC '04). (9 2004). 283  298.
 L. Weng, G. Agrawal, U.V. Catalyurek, T.M. Kurc, S. Narayanan, J.H. Saltz "An Approach for Automatic Data Virtualization." in Proceedings of the 13th IEEE International Symposium on HighPerformance Distributed Computing (HPDC13). (6 2004). 24  33.
 Parashar,M; Klie,H; Catalyurek,U; Kurc,T; Matossian,V; Saltz,J; Wheeler,M,F "Application of gridenabled technologies for solving optimization problems in datadriven reservoir studies." JOURNAL: "COMPUTATIONAL SCIENCE  ICCS 2004, PT 3, PROCEEDINGS." in 4th International Conference on Computational Science (ICCS 2004). BERLIN, (1 2004). 805  812.
 M. Parashar, H. Klie, U.V. Catalyurek, T.M. Kurc, V. Matossian, J.H Saltz, M.F. Wheeler "Applications of Gridenabled Technologies for Solving Optimization Problems in DataDriven Reservior Studies." in Workshop on Distributed Data Driven Applications and Systems (ICCS 2004). Kravkow, (6 2004).
 N. Vydyanathan, G. Khanna, T.M. Kurc, U.V. Catalyurek, P. Wyckoff, J.H. Saltz, P. Sadayappan "Use of PVFS for Efficient Execution of Jobs with PipelineShared I/O." in Fifth IEEE/ACM International Workshop on Grid Computing, 2004. (1 2004). 235  242.
2003
 J.H. Saltz, U.V. Catalyurek, T.M. Kurc, M. Gray, S. Hastings, S. Langella, S. Narayan, R. Martino, K. Bryant, M. Peszynska, M.F. Wheeler, A. Sussman, M. Beynon, C. Hansen, D. Stredney, D. Sessana "Driving Scientific Applications by Data in Distributed Environments." in Proceedings of the Workshop on Dynamic DataDriven Application Systems. Melbourne, (6 2003).
 T.M. Kurc, F. Lee, G. Agrawal, U.V. Catalyurek, R. Ferreira, J.H. Saltz "Optimizing Reduction Computations Distributed Environment." in ACM/IEEE SC2003 Conference. Phoenix, (11 2003).
 P. Balaji, J. Wu, T.M. Kurc, U.V. Catalyurek, D.K. Panda, J.H. Saltz "Impact of High Performance Sockets on Data Intensive Applications." in Proceedings of the 12th IEEE International Symposium on High Performance Distributed Computing (HPDC12). (6 2003). 24  33.
 Ü.V. Çatalyürek, M. Gray, T.M. Kurç, J.H. Saltz, E. Stahlberg, and R. Ferreira "A Componentbased Implementation of Multiple Sequence Alignment." in Proceedings of the 2003 ACM Symposium on Applied Computing, SAC2003. (1 2003). 122  126.
 S. Narayanan, U.V. Catalyurek, T.M. Kurc, X. Zhang, J.H. Saltz "Applying Database Support for Large Scale Data Driven Science in Distributed Environments." in Proceedings of the Fourth International Workshop on Grid Computing. (1 2003). 141  148.
 Saltz,J; Catalyurek,U; Kurc,T; Gray,M; Hastings,S; Langella,S; Narayanan,S; Martino,R; Bryant,S; Peszynska,M; Wheeler,M; Sussman,A; Beynon,M; Hansen,C; Stredney,D; Sessanna,D "Driving scientific applications by data in distributed environments." JOURNAL: "COMPUTATIONAL SCIENCE  ICCS 2003, PT IV, PROCEEDINGS." in International Conference on Computational Science (ICCS 2003). BERLIN, (1 2003). 355  364.
 T. Kurc, S. Hastings, U.V. Catalyurek, J.H. Saltz, J.D. Fleig, B.D. Clymer, H. von TenggKobligk, K.T. Baudendistel, R. Machiraju, M.V Knopp "A Disdtributed Execution Environment for Analysis of DCEMR Image Datasets." in The Society for Computer Applications in Radiology (SCAR 2003). (1 2003).
 S. Hastings, T.M. Kurc, S. Langella, U.V. Catalyurek, T. Pan, J.H. Saltz "Image Processing for the Grid: A Toolkit for Building Gridenabled Image Processing Applications." in Proceedings of the 3rd International Symposium on Cluster Computing and the Grid (CCGrid '03). (1 2003). 36  43.
2002
 H. Andrade, T.M. Kurc, U.V. Catalyurek, A. Sussman, J.H. Saltz "Persistent Caching in a Multiple Query Optimization Framework." in Proceedings of the Sixth Workshop on Languages, Compilers and Runtime Systems for Scalable Computers. (3 2002).
 M. Beynon, T.M. Kurc, U.V. Catalyurek, A. Sussman, J.H. Saltz "Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems." in Proceedings of 16th International Parallel and Distributed Processing Symposium (IPDPS),The 11th Heterogeneous Computing Workshop. Fort Lauderdale, Florida, (4 2002). 0084 
 M. Spencer, R. Ferreira, M. Beynon, T.M. Kurc, U.V. Catalyurek, A. Sussman, J.H. Saltz "Executing Multiple Pipelined Data Analysis Operations in the Grid." in Proceedings of the 2002 ACM/IEEE SC02 Conference. Baltimore, (11 2002).
 U.V. Catalyurek, E.A. Stahlberg, R.A. Ferreira, J.H. Saltz "Improving Performance of Multiple Sequence Alignment Analysis in MultiClient Environments." in Proceedings of the First International Workshop on High Performance Computational Biology. Fort Lauderdale, (4 2002). 0183b 
2001
 U.V. Catalyurek, C. Aykanat "A HypergraphPartitioning Approach for CoarseGrain Decomposition." in Proceedings of the ACM/IEEE SC2001 Conference (SC'01). Denver, (11 2001). 42 
 C. Chang, T.M. Kurc, A. Sussman, U.V. Catalyurek, J.H. Saltz "A HypergraphBased Workload Partitioning Strategy for Parallel Data Aggregation." in Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing. Portsmouth, (3 2001).
 M. Beynon, A. Sussman, U.V. Catalyurek, T.M. Kurc, J.H. Saltz "Performance Optimization for Data Intensive Grid Applications." in Proceedings of the Third Annual International Workshop on Active Middleware Services (AMS2001). (8 2001). 97  105.
 U.V. Catalyurek, C. Aykanat "A FineGrain Hypergraph Model for 2D Decomposition of Sparse Matrices." in Proceedings of International Parallel and Distributed Processing Symposium (IPDPS), 8th International Workshop on Solving Irregularly structured Problems in Parallel (Irregular 2001). San Francisco, (11 2001). 1119  1204.
 Beynon,M,D; Kurc,T; Catalyurek,U; Chang,C,L; Sussman,A; Saltz,J "Distributed processing of very large datasets with DataCutter." JOURNAL: "PARALLEL COMPUTING." in Workshop on Clusters and Computational Grids for Scientific Computing. AMSTERDAM, (10 2001). 1457  1478.
1996
 A. Pinar, U.V. Catalyurek, C. Aykanat, M. Pinar "Decomposing Linear Programs for Parallel Solution." in Lecture Notes in Computer Science. (1 1996). 473  482.
 Ü.V. Çatalyürek and C. Aykanat "Decomposing irregularly sparse matrices for parallel matrixvector multiplications." in Proceedings of the Third International Workshop on Parallel Algorithms for Irregularly Structured Problems. (1 1996). 75  86.
1995
 U.V. Catalyurek, C. Aykanat "A hypergraph model for mapping repeated sparse matrixvector product computations onto multicomputers." in Proceedings of the International Conference on High Performance Computing (HiPC' 95). Goa, (12 1995).